Analysis of interatomic Contacts of Structural Units in PDB entry:
28LX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28LX entry

There is 1 chain in PDB entry 28LX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ALA 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 28LX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 31Right-handed 310
Helix 2
AA2
A
103 125Right-handed alpha
Helix 3
AA3
A
160 178Right-handed alpha
Helix 4
AA4
A
179 181Right-handed 310
Helix 5
AA5
A
195 204Right-handed alpha
Helix 6
AA6
A
221 225Right-handed alpha
Helix 7
AA7
A
230 235Right-handed 310
Helix 8
AA8
A
244 255Right-handed alpha
Helix 9
AA9
A
636 638Right-handed 310
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There are 11 sheets in PDB entry 28LX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
33 38anti-parallel
Strand 4
A
44 46anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
65 67anti-parallel
Strand 3
A
54 56anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
192 194anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
219 220anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
266 268parallel
Strand 3
A
281 285parallel
Strand 4
A
288 295anti-parallel
Strand 5
A
298 302anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
277 279parallel
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There are 17 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
346 349parallel
Strand 3
A
361 364parallel
Strand 4
A
376 379parallel
Strand 5
A
392 394parallel
Strand 6
A
407 409parallel
Strand 7
A
422 424parallel
Strand 8
A
520 522parallel
Strand 9
A
535 537parallel
Strand 10
A
550 552parallel
Strand 11
A
565 567parallel
Strand 12
A
580 585parallel
Strand 13
A
595 600parallel
Strand 14
A
610 614parallel
Strand 15
A
624 628parallel
Strand 16
A
640 644anti-parallel
Strand 17
A
650 652anti-parallel
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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
355 356parallel
Strand 3
A
370 371parallel
Strand 4
A
385 386parallel
Strand 5
A
400 401parallel
Strand 6
A
415 416parallel
Strand 7
A
430 431parallel
Strand 8
A
528 529parallel
Strand 9
A
543 544parallel
Strand 10
A
558 559parallel
Strand 11
A
573 574parallel
Strand 12
A
588 589parallel
Strand 13
A
603 604parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 444first strand
Strand 2
A
447 455anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 471first strand
Strand 2
A
508 513anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 486first strand
Strand 2
A
492 499anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il