Analysis of interatomic Contacts of Structural Units in PDB entry:
28MG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28MG entry

There are 3 chains in PDB entry 28MG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 112	ALA 663
B	PRO 103	ALA 663
C	GLN 119	ARG 367

There are 24 helices in PDB entry 28MG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	112	126	Right-handed alpha
Helix 2	AA2	A	160	177	Right-handed alpha
Helix 3	AA3	A	178	181	Right-handed 310
Helix 4	AA4	A	195	204	Right-handed alpha
Helix 5	AA5	A	221	225	Right-handed alpha
Helix 6	AA6	A	230	235	Right-handed 310
Helix 7	AA7	A	244	255	Right-handed alpha
Helix 8	AA8	A	636	638	Right-handed 310
Helix 9	AA9	B	104	126	Right-handed alpha
Helix 10	AB1	B	160	177	Right-handed alpha
Helix 11	AB2	B	178	181	Right-handed 310
Helix 12	AB3	B	195	204	Right-handed alpha
Helix 13	AB4	B	221	225	Right-handed alpha
Helix 14	AB5	B	230	235	Right-handed 310
Helix 15	AB6	B	244	255	Right-handed alpha
Helix 16	AB7	B	636	638	Right-handed 310
Helix 17	AB8	C	120	126	Right-handed alpha
Helix 18	AB9	C	160	177	Right-handed alpha
Helix 19	AC1	C	178	181	Right-handed 310
Helix 20	AC2	C	195	204	Right-handed alpha
Helix 21	AC3	C	221	225	Right-handed alpha
Helix 22	AC4	C	230	235	Right-handed 310
Helix 23	AC5	C	244	255	Right-handed alpha
Helix 24	AC6	C	636	638	Right-handed 310

There are 26 sheets in PDB entry 28MG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	B	144	145	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	192	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	219	220	anti-parallel

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There are 23 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	266	268	parallel
Strand 3	A	281	285	parallel
Strand 4	A	288	295	anti-parallel
Strand 5	A	298	302	anti-parallel
Strand 6	B	331	334	anti-parallel
Strand 7	B	346	349	parallel
Strand 8	B	361	364	parallel
Strand 9	B	376	379	parallel
Strand 10	B	392	394	parallel
Strand 11	B	407	409	parallel
Strand 12	B	422	424	parallel
Strand 13	B	520	522	parallel
Strand 14	B	535	537	parallel
Strand 15	B	550	552	parallel
Strand 16	B	565	567	parallel
Strand 17	B	580	585	parallel
Strand 18	B	595	600	parallel
Strand 19	B	610	614	parallel
Strand 20	B	624	628	parallel
Strand 21	B	640	644	anti-parallel
Strand 22	B	650	652	anti-parallel
Strand 23	C	656	657	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	277	279	parallel

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There are 23 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	657	first strand
Strand 2	A	650	652	parallel
Strand 3	A	640	644	anti-parallel
Strand 4	A	624	628	anti-parallel
Strand 5	A	610	614	parallel
Strand 6	A	595	600	parallel
Strand 7	A	580	585	parallel
Strand 8	A	565	567	parallel
Strand 9	A	550	552	parallel
Strand 10	A	535	537	parallel
Strand 11	A	520	522	parallel
Strand 12	A	422	424	parallel
Strand 13	A	407	409	parallel
Strand 14	A	392	394	parallel
Strand 15	A	376	379	parallel
Strand 16	A	361	364	parallel
Strand 17	A	346	349	parallel
Strand 18	A	331	334	parallel
Strand 19	C	298	302	anti-parallel
Strand 20	C	288	295	anti-parallel
Strand 21	C	281	285	anti-parallel
Strand 22	C	266	268	parallel
Strand 23	C	239	243	parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	355	356	parallel
Strand 3	A	370	371	parallel
Strand 4	A	385	386	parallel
Strand 5	A	400	401	parallel
Strand 6	A	415	416	parallel
Strand 7	A	430	431	parallel
Strand 8	A	528	529	parallel
Strand 9	A	543	544	parallel
Strand 10	A	555	559	parallel
Strand 11	A	570	574	parallel
Strand 12	A	588	589	parallel
Strand 13	A	603	604	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	444	first strand
Strand 2	A	447	455	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	471	first strand
Strand 2	A	508	513	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	486	first strand
Strand 2	A	492	499	anti-parallel

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There are 23 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	657	first strand
Strand 2	C	650	652	parallel
Strand 3	C	640	644	anti-parallel
Strand 4	C	624	628	anti-parallel
Strand 5	C	610	614	parallel
Strand 6	C	595	600	parallel
Strand 7	C	580	585	parallel
Strand 8	C	565	567	parallel
Strand 9	C	550	552	parallel
Strand 10	C	535	537	parallel
Strand 11	C	520	522	parallel
Strand 12	C	422	424	parallel
Strand 13	C	407	409	parallel
Strand 14	C	392	394	parallel
Strand 15	C	376	379	parallel
Strand 16	C	361	364	parallel
Strand 17	C	346	349	parallel
Strand 18	C	331	334	parallel
Strand 19	B	298	302	anti-parallel
Strand 20	B	288	295	anti-parallel
Strand 21	B	281	285	anti-parallel
Strand 22	B	266	268	parallel
Strand 23	B	239	243	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	C	144	145	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	192	194	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	219	220	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	277	279	parallel

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There are 13 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	355	356	parallel
Strand 3	B	370	371	parallel
Strand 4	B	385	386	parallel
Strand 5	B	400	401	parallel
Strand 6	B	415	416	parallel
Strand 7	B	430	431	parallel
Strand 8	B	528	529	parallel
Strand 9	B	543	544	parallel
Strand 10	B	555	559	parallel
Strand 11	B	570	574	parallel
Strand 12	B	588	589	parallel
Strand 13	B	603	604	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	444	first strand
Strand 2	B	447	455	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	471	first strand
Strand 2	B	508	513	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	486	first strand
Strand 2	B	492	499	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	192	194	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	219	220	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	277	279	parallel

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There are 13 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	355	356	parallel
Strand 3	C	370	371	parallel
Strand 4	C	385	386	parallel
Strand 5	C	400	401	parallel
Strand 6	C	415	416	parallel
Strand 7	C	430	431	parallel
Strand 8	C	528	529	parallel
Strand 9	C	543	544	parallel
Strand 10	C	555	559	parallel
Strand 11	C	570	574	parallel
Strand 12	C	588	589	parallel
Strand 13	C	603	604	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	444	first strand
Strand 2	C	447	455	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	471	first strand
Strand 2	C	508	513	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	486	first strand
Strand 2	C	492	499	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28MG

Analysis of interatomic Contacts of Structural Units in PDB entry:
28MG