Analysis of interatomic Contacts of Structural Units in PDB entry:
28MJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28MJ entry

There are 2 chains in PDB entry 28MJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 7GLY 165
A
 GLU 38SER 1048
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 28MJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
29 41Right-handed alpha
Helix 2
AA2
B
63 67Right-handed 310
Helix 3
AA3
B
111 124Right-handed alpha
Helix 4
AA4
B
126 130Right-handed 310
Helix 5
AA5
B
144 149Right-handed alpha
Helix 6
AA6
A
40 52Right-handed alpha
Helix 7
AA7
A
52 60Right-handed alpha
Helix 8
AA8
A
70 84Right-handed alpha
Helix 9
AA9
A
97 103Right-handed 310
Helix 10
AB1
A
108 115Right-handed alpha
Helix 11
AB2
A
117 122Right-handed alpha
Helix 12
AB3
A
122 128Right-handed alpha
Helix 13
AB4
A
148 154Right-handed 310
Helix 14
AB5
A
163 176Right-handed alpha
Helix 15
AB6
A
301 306Right-handed alpha
Helix 16
AB7
A
320 340Right-handed alpha
Helix 17
AB8
A
347 364Right-handed alpha
Helix 18
AB9
A
372 382Right-handed alpha
Helix 19
AC1
A
387 408Right-handed alpha
Helix 20
AC2
A
422 427Right-handed alpha
Helix 21
AC3
A
432 436Right-handed 310
Helix 22
AC4
A
443 451Right-handed alpha
Helix 23
AC5
A
451 460Right-handed alpha
Helix 24
AC6
A
469 483Right-handed alpha
Helix 25
AC7
A
502 508Right-handed 310
Helix 26
AC8
A
513 517Right-handed 310
Helix 27
AC9
A
520 533Right-handed alpha
Helix 28
AD1
A
546 551Right-handed 310
Helix 29
AD2
A
554 561Right-handed alpha
Helix 30
AD3
A
570 585Right-handed alpha
Helix 31
AD4
A
623 629Right-handed alpha
Helix 32
AD5
A
633 650Right-handed alpha
Helix 33
AD6
A
650 663Right-handed alpha
Helix 34
AD7
A
665 675Right-handed alpha
Helix 35
AD8
A
681 692Right-handed alpha
Helix 36
AD9
A
695 712Right-handed alpha
Helix 37
AE1
A
712 722Right-handed alpha
Helix 38
AE2
A
751 770Right-handed alpha
Helix 39
AE3
A
774 778Right-handed 310
Helix 40
AE4
A
779 790Right-handed alpha
Helix 41
AE5
A
817 834Right-handed alpha
Helix 42
AE6
A
839 843Right-handed 310
Helix 43
AE7
A
857 873Right-handed alpha
Helix 44
AE8
A
879 889Right-handed alpha
Helix 45
AE9
A
894 915Right-handed alpha
Helix 46
AF1
A
917 921Right-handed 310
Helix 47
AF2
A
967 980Right-handed alpha
Helix 48
AF3
A
999 1007Right-handed 310
Helix 49
AF4
A
1008 1013Right-handed alpha
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There are 9 sheets in PDB entry 28MJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
8 13anti-parallel
Strand 3
B
73 80parallel
Strand 4
B
48 52anti-parallel
Strand 5
B
55 56anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 106first strand
Strand 2
B
88 93anti-parallel
Strand 3
B
155 158parallel
Strand 4
B
132 134anti-parallel
Strand 5
B
137 138anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
87 91parallel
Strand 3
A
63 67parallel
Strand 4
A
156 160parallel
Strand 5
A
182 189parallel
Strand 6
A
192 198anti-parallel
Strand 7
A
416 417anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
297 298anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 222first strand
Strand 2
A
227 231anti-parallel
Strand 3
A
270 273anti-parallel
Strand 4
A
260 267anti-parallel
Strand 5
A
244 251anti-parallel
Strand 6
A
284 291anti-parallel
Strand 7
A
215 222anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
492 496parallel
Strand 3
A
462 466parallel
Strand 4
A
563 566parallel
Strand 5
A
588 594parallel
Strand 6
A
597 603anti-parallel
Strand 7
A
923 927anti-parallel
Strand 8
A
932 936anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
944 947first strand
Strand 2
A
950 952anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1043 1046parallel
Strand 3
A
1021 1028anti-parallel
Strand 4
A
985 988anti-parallel
Strand 5
A
991 994anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1043 1046parallel
Strand 3
A
1021 1028anti-parallel
Strand 4
A
1038 1039anti-parallel
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