Analysis of interatomic Contacts of Structural Units in PDB entry:
28MK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28MK entry

There are 2 chains in PDB entry 28MK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38SER 1048
B
 THR 7GLY 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 28MK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 52Right-handed alpha
Helix 2
AA2
A
52 60Right-handed alpha
Helix 3
AA3
A
70 84Right-handed alpha
Helix 4
AA4
A
97 103Right-handed 310
Helix 5
AA5
A
108 115Right-handed alpha
Helix 6
AA6
A
117 122Right-handed alpha
Helix 7
AA7
A
122 128Right-handed alpha
Helix 8
AA8
A
148 154Right-handed 310
Helix 9
AA9
A
163 176Right-handed alpha
Helix 10
AB1
A
254 257Right-handed 310
Helix 11
AB2
A
301 306Right-handed alpha
Helix 12
AB3
A
320 340Right-handed alpha
Helix 13
AB4
A
347 364Right-handed alpha
Helix 14
AB5
A
372 382Right-handed alpha
Helix 15
AB6
A
387 408Right-handed alpha
Helix 16
AB7
A
422 427Right-handed alpha
Helix 17
AB8
A
432 436Right-handed 310
Helix 18
AB9
A
443 451Right-handed alpha
Helix 19
AC1
A
451 460Right-handed alpha
Helix 20
AC2
A
469 483Right-handed alpha
Helix 21
AC3
A
502 508Right-handed 310
Helix 22
AC4
A
513 517Right-handed 310
Helix 23
AC5
A
520 533Right-handed alpha
Helix 24
AC6
A
546 551Right-handed 310
Helix 25
AC7
A
554 561Right-handed alpha
Helix 26
AC8
A
570 585Right-handed alpha
Helix 27
AC9
A
623 629Right-handed alpha
Helix 28
AD1
A
633 650Right-handed alpha
Helix 29
AD2
A
650 663Right-handed alpha
Helix 30
AD3
A
665 675Right-handed alpha
Helix 31
AD4
A
681 691Right-handed alpha
Helix 32
AD5
A
695 712Right-handed alpha
Helix 33
AD6
A
712 722Right-handed alpha
Helix 34
AD7
A
751 769Right-handed alpha
Helix 35
AD8
A
774 778Right-handed 310
Helix 36
AD9
A
779 788Right-handed alpha
Helix 37
AE1
A
817 835Right-handed alpha
Helix 38
AE2
A
857 873Right-handed alpha
Helix 39
AE3
A
879 889Right-handed alpha
Helix 40
AE4
A
894 915Right-handed alpha
Helix 41
AE5
A
917 920Right-handed 310
Helix 42
AE6
A
967 979Right-handed alpha
Helix 43
AE7
A
998 1004Right-handed alpha
Helix 44
AE8
A
1008 1013Right-handed alpha
Helix 45
AE9
B
29 41Right-handed alpha
Helix 46
AF1
B
62 67Right-handed alpha
Helix 47
AF2
B
111 123Right-handed alpha
Helix 48
AF3
B
133 137Right-handed 310
Helix 49
AF4
B
144 149Right-handed 310
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There are 9 sheets in PDB entry 28MK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
87 91parallel
Strand 3
A
63 67parallel
Strand 4
A
156 160parallel
Strand 5
A
182 189parallel
Strand 6
A
192 198anti-parallel
Strand 7
A
416 417anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
295 298anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 222first strand
Strand 2
A
227 231anti-parallel
Strand 3
A
270 273anti-parallel
Strand 4
A
260 267anti-parallel
Strand 5
A
244 252anti-parallel
Strand 6
A
282 291anti-parallel
Strand 7
A
216 222anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
492 496parallel
Strand 3
A
462 466parallel
Strand 4
A
563 566parallel
Strand 5
A
588 594parallel
Strand 6
A
597 603anti-parallel
Strand 7
A
922 927anti-parallel
Strand 8
A
932 937anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
944 947first strand
Strand 2
A
950 952anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1043 1046parallel
Strand 3
A
1021 1028anti-parallel
Strand 4
A
985 988anti-parallel
Strand 5
A
991 994anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1043 1046parallel
Strand 3
A
1021 1028anti-parallel
Strand 4
A
1038 1039anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
20 24anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
48 52anti-parallel
Strand 3
B
77 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il