Analysis of interatomic Contacts of Structural Units in PDB entry:
28MQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28MQ entry

There are 3 chains in PDB entry 28MQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 82ASN 330
B
 ILE 39HIS 1049
C
 THR 7ALA 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 28MQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 92Right-handed 310
Helix 2
AA2
A
97 114Right-handed alpha
Helix 3
AA3
A
189 193Right-handed 310
Helix 4
AA4
A
205 215Right-handed alpha
Helix 5
AA5
A
220 225Right-handed 310
Helix 6
AA6
A
236 252Right-handed alpha
Helix 7
AA7
A
253 258Right-handed alpha
Helix 8
AA8
A
264 288Right-handed alpha
Helix 9
AA9
A
289 293Right-handed 310
Helix 10
AB1
A
309 330Right-handed alpha
Helix 11
AB2
B
45 60Right-handed alpha
Helix 12
AB3
B
70 84Right-handed alpha
Helix 13
AB4
B
97 103Right-handed 310
Helix 14
AB5
B
108 115Right-handed alpha
Helix 15
AB6
B
117 128Right-handed alpha
Helix 16
AB7
B
147 154Right-handed 310
Helix 17
AB8
B
163 175Right-handed alpha
Helix 18
AB9
B
253 257Right-handed 310
Helix 19
AC1
B
302 306Right-handed 310
Helix 20
AC2
B
320 340Right-handed alpha
Helix 21
AC3
B
347 365Right-handed alpha
Helix 22
AC4
B
372 382Right-handed alpha
Helix 23
AC5
B
387 408Right-handed alpha
Helix 24
AC6
B
421 427Right-handed alpha
Helix 25
AC7
B
432 436Right-handed 310
Helix 26
AC8
B
443 460Right-handed alpha
Helix 27
AC9
B
469 483Right-handed alpha
Helix 28
AD1
B
504 509Right-handed alpha
Helix 29
AD2
B
513 517Right-handed 310
Helix 30
AD3
B
520 533Right-handed alpha
Helix 31
AD4
B
546 550Right-handed 310
Helix 32
AD5
B
554 561Right-handed alpha
Helix 33
AD6
B
570 583Right-handed alpha
Helix 34
AD7
B
610 614Right-handed 310
Helix 35
AD8
B
623 629Right-handed alpha
Helix 36
AD9
B
633 650Right-handed alpha
Helix 37
AE1
B
650 663Right-handed alpha
Helix 38
AE2
B
665 675Right-handed alpha
Helix 39
AE3
B
681 691Right-handed alpha
Helix 40
AE4
B
695 712Right-handed alpha
Helix 41
AE5
B
712 722Right-handed alpha
Helix 42
AE6
B
751 769Right-handed alpha
Helix 43
AE7
B
774 778Right-handed 310
Helix 44
AE8
B
779 788Right-handed alpha
Helix 45
AE9
B
818 834Right-handed alpha
Helix 46
AF1
B
839 843Right-handed 310
Helix 47
AF2
B
857 873Right-handed alpha
Helix 48
AF3
B
879 888Right-handed alpha
Helix 49
AF4
B
894 915Right-handed alpha
Helix 50
AF5
B
917 920Right-handed 310
Helix 51
AF6
B
947 949Right-handed 310
Helix 52
AF7
B
967 980Right-handed alpha
Helix 53
AF8
B
1002 1007Right-handed 310
Helix 54
AF9
B
1008 1014Right-handed alpha
Helix 55
AG1
C
29 42Right-handed alpha
Helix 56
AG2
C
44 46Right-handed 310
Helix 57
AG3
C
62 67Right-handed 310
Helix 58
AG4
C
111 124Right-handed alpha
Helix 59
AG5
C
126 130Right-handed 310
Helix 60
AG6
C
144 149Right-handed 310
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There are 10 sheets in PDB entry 28MQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
164 167anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 138first strand
Strand 2
B
87 91parallel
Strand 3
B
63 67parallel
Strand 4
B
156 160parallel
Strand 5
B
182 189parallel
Strand 6
B
192 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
295 298anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
244 248anti-parallel
Strand 3
B
287 291anti-parallel
Strand 4
B
215 222anti-parallel
Strand 5
B
227 231anti-parallel
Strand 6
B
270 273anti-parallel
Strand 7
B
264 267anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
538 541first strand
Strand 2
B
492 496parallel
Strand 3
B
462 466parallel
Strand 4
B
563 566parallel
Strand 5
B
588 594parallel
Strand 6
B
597 603anti-parallel
Strand 7
B
922 927anti-parallel
Strand 8
B
932 937anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
944 945first strand
Strand 2
B
951 952anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
958 961first strand
Strand 2
B
1043 1046parallel
Strand 3
B
1021 1024anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1027 1028first strand
Strand 2
B
1038 1039anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 23first strand
Strand 2
C
9 13anti-parallel
Strand 3
C
73 80parallel
Strand 4
C
48 52anti-parallel
Strand 5
C
55 56anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 106first strand
Strand 2
C
88 93anti-parallel
Strand 3
C
155 159parallel
Strand 4
C
131 134anti-parallel
Strand 5
C
137 138anti-parallel
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