Analysis of interatomic Contacts of Structural Units in PDB entry:
28NB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28NB entry

There are 9 chains in PDB entry 28NB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 662	LYS 828
B	GLY 662	LYS 828
C	GLY 662	LYS 828
D	GLY 662	LYS 828
E	GLY 662	LYS 828
F	GLY 662	LYS 828
G	GLY 662	LYS 828
H	GLY 662	LYS 828
I	GLY 662	LEU 709

There are 8 helices in PDB entry 28NB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	712	716	Right-handed 310
Helix 2	AA2	A	759	763	Right-handed 310
Helix 3	AA3	B	759	763	Right-handed 310
Helix 4	AA4	C	759	763	Right-handed 310
Helix 5	AA5	D	759	763	Right-handed 310
Helix 6	AA6	E	759	763	Right-handed 310
Helix 7	AA7	F	736	740	Right-handed 310
Helix 8	AA8	I	759	763	Right-handed 310

There are 27 sheets in PDB entry 28NB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	711	first strand
Strand 2	A	664	671	parallel
Strand 3	A	767	774	anti-parallel
Strand 4	A	701	703	anti-parallel
Strand 5	A	682	686	anti-parallel
Strand 6	A	689	692	anti-parallel
Strand 7	A	664	671	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	735	first strand
Strand 2	A	742	745	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	780	first strand
Strand 2	A	798	801	parallel
Strand 3	A	789	792	anti-parallel
Strand 4	A	805	812	anti-parallel
Strand 5	A	821	826	anti-parallel
Strand 6	A	777	780	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	711	first strand
Strand 2	B	664	667	parallel
Strand 3	B	771	779	anti-parallel
Strand 4	B	822	827	anti-parallel
Strand 5	B	805	809	anti-parallel
Strand 6	B	789	792	anti-parallel
Strand 7	B	798	800	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	B	682	686	anti-parallel
Strand 3	B	689	692	anti-parallel
Strand 4	B	669	671	parallel
Strand 5	B	767	768	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	737	first strand
Strand 2	B	740	742	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	711	first strand
Strand 2	C	664	671	parallel
Strand 3	C	689	692	parallel
Strand 4	C	682	685	anti-parallel
Strand 5	C	701	703	anti-parallel
Strand 6	C	767	780	anti-parallel
Strand 7	C	820	827	anti-parallel
Strand 8	C	805	815	anti-parallel
Strand 9	C	789	791	anti-parallel
Strand 10	C	799	800	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	711	first strand
Strand 2	C	664	671	parallel
Strand 3	C	767	780	anti-parallel
Strand 4	C	820	827	anti-parallel
Strand 5	C	805	815	anti-parallel
Strand 6	C	789	791	anti-parallel
Strand 7	C	799	800	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	663	668	first strand
Strand 2	D	690	691	first strand
Strand 3	D	798	800	first strand
Strand 4	D	789	792	anti-parallel
Strand 5	D	805	815	anti-parallel
Strand 6	D	820	827	anti-parallel
Strand 7	D	769	780	anti-parallel
Strand 8	D	701	703	anti-parallel
Strand 9	D	682	685	anti-parallel
Strand 10	D	690	691	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	732	737	first strand
Strand 2	D	740	745	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	707	709	first strand
Strand 2	E	664	671	parallel
Strand 3	E	689	692	parallel
Strand 4	E	682	686	anti-parallel
Strand 5	E	701	703	anti-parallel
Strand 6	E	767	780	anti-parallel
Strand 7	E	821	827	anti-parallel
Strand 8	E	806	807	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	707	709	first strand
Strand 2	E	664	671	parallel
Strand 3	E	767	780	anti-parallel
Strand 4	E	821	827	anti-parallel
Strand 5	E	806	807	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	732	737	first strand
Strand 2	E	740	745	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	790	792	first strand
Strand 2	E	798	800	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	701	702	first strand
Strand 2	F	682	686	anti-parallel
Strand 3	F	689	692	anti-parallel
Strand 4	F	664	671	parallel
Strand 5	F	707	711	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	701	702	first strand
Strand 2	F	682	686	anti-parallel
Strand 3	F	689	692	anti-parallel
Strand 4	F	664	671	parallel
Strand 5	F	767	776	anti-parallel
Strand 6	F	825	827	anti-parallel
Strand 7	F	806	807	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	733	734	first strand
Strand 2	F	743	744	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	779	780	first strand
Strand 2	F	821	822	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	806	810	first strand
Strand 2	G	821	827	anti-parallel
Strand 3	G	767	780	anti-parallel
Strand 4	G	701	703	anti-parallel
Strand 5	G	682	686	anti-parallel
Strand 6	G	689	692	anti-parallel
Strand 7	G	664	671	parallel
Strand 8	G	767	780	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	732	733	first strand
Strand 2	G	744	745	anti-parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	707	709	first strand
Strand 2	H	663	671	parallel
Strand 3	H	689	692	parallel
Strand 4	H	682	685	anti-parallel
Strand 5	H	701	703	anti-parallel
Strand 6	H	767	780	anti-parallel
Strand 7	H	821	827	anti-parallel
Strand 8	H	805	810	anti-parallel
Strand 9	H	789	791	anti-parallel
Strand 10	H	799	801	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	707	709	first strand
Strand 2	H	663	671	parallel
Strand 3	H	767	780	anti-parallel
Strand 4	H	821	827	anti-parallel
Strand 5	H	805	810	anti-parallel
Strand 6	H	789	791	anti-parallel
Strand 7	H	799	801	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	735	737	first strand
Strand 2	H	740	742	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	707	709	first strand
Strand 2	I	663	671	parallel
Strand 3	I	689	692	parallel
Strand 4	I	682	685	anti-parallel
Strand 5	I	701	703	anti-parallel
Strand 6	I	767	780	anti-parallel
Strand 7	I	820	827	anti-parallel
Strand 8	I	809	815	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	707	709	first strand
Strand 2	I	663	671	parallel
Strand 3	I	767	780	anti-parallel
Strand 4	I	820	827	anti-parallel
Strand 5	I	809	815	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	733	736	first strand
Strand 2	I	741	744	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	798	799	first strand
Strand 2	I	789	792	anti-parallel
Strand 3	I	805	806	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28NB

Analysis of interatomic Contacts of Structural Units in PDB entry:
28NB