Analysis of interatomic Contacts of Structural Units in PDB entry:
28OE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28OE entry

There are 15 chains in PDB entry 28OE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 31	SER 56
B	GLY 114	SER 155
C	LEU 13	LYS 333
D	MET 1	ARG 233
E	ALA 2	MET 147
F	PRO 38	ARG 134
G	LYS 20	GLY 102
H	THR 10	THR 120
I	ARG 27	LYS 122
J	PRO 38	ARG 134
K	LYS 20	GLY 102
L	THR 10	LYS 119
M	ARG 27	LYS 122
N	A -75	T 75
O	A -75	T 75

There are 63 helices in PDB entry 28OE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	20	25	Right-handed alpha
Helix 2	AA2	C	41	46	Right-handed 310
Helix 3	AA3	C	73	82	Right-handed alpha
Helix 4	AA4	C	96	98	Right-handed 310
Helix 5	AA5	C	103	114	Right-handed alpha
Helix 6	AA6	C	117	136	Right-handed alpha
Helix 7	AA7	C	233	238	Right-handed alpha
Helix 8	AA8	C	255	276	Right-handed alpha
Helix 9	AA9	C	287	291	Right-handed 310
Helix 10	AB1	C	310	318	Right-handed alpha
Helix 11	AB2	D	9	13	Right-handed alpha
Helix 12	AB3	D	14	16	Right-handed 310
Helix 13	AB4	D	40	47	Right-handed alpha
Helix 14	AB5	D	48	50	Right-handed 310
Helix 15	AB6	D	64	67	Right-handed 310
Helix 16	AB7	D	73	83	Right-handed alpha
Helix 17	AB8	D	85	91	Right-handed alpha
Helix 18	AB9	D	92	101	Right-handed alpha
Helix 19	AC1	D	139	144	Right-handed alpha
Helix 20	AC2	D	171	183	Right-handed alpha
Helix 21	AC3	D	205	214	Right-handed alpha
Helix 22	AC4	E	3	16	Right-handed alpha
Helix 23	AC5	E	59	63	Right-handed 310
Helix 24	AC6	E	98	112	Right-handed alpha
Helix 25	AC7	E	120	130	Right-handed alpha
Helix 26	AC8	E	131	144	Right-handed alpha
Helix 27	AC9	F	44	55	Right-handed alpha
Helix 28	AD1	F	63	76	Right-handed alpha
Helix 29	AD2	F	85	114	Right-handed alpha
Helix 30	AD3	F	120	131	Right-handed alpha
Helix 31	AD4	G	24	29	Right-handed 310
Helix 32	AD5	G	30	42	Right-handed alpha
Helix 33	AD6	G	49	76	Right-handed alpha
Helix 34	AD7	G	82	93	Right-handed alpha
Helix 35	AD8	H	16	22	Right-handed alpha
Helix 36	AD9	H	27	37	Right-handed alpha
Helix 37	AE1	H	46	73	Right-handed alpha
Helix 38	AE2	H	79	89	Right-handed alpha
Helix 39	AE3	H	90	97	Right-handed alpha
Helix 40	AE4	H	112	116	Right-handed 310
Helix 41	AE5	I	34	46	Right-handed alpha
Helix 42	AE6	I	52	81	Right-handed alpha
Helix 43	AE7	I	87	99	Right-handed alpha
Helix 44	AE8	I	101	122	Right-handed alpha
Helix 45	AE9	J	44	55	Right-handed alpha
Helix 46	AF1	J	63	76	Right-handed alpha
Helix 47	AF2	J	85	114	Right-handed alpha
Helix 48	AF3	J	120	131	Right-handed alpha
Helix 49	AF4	K	25	29	Right-handed 310
Helix 50	AF5	K	30	42	Right-handed alpha
Helix 51	AF6	K	49	62	Right-handed alpha
Helix 52	AF7	K	64	76	Right-handed alpha
Helix 53	AF8	K	82	93	Right-handed alpha
Helix 54	AF9	L	27	37	Right-handed alpha
Helix 55	AG1	L	46	62	Right-handed alpha
Helix 56	AG2	L	64	73	Right-handed alpha
Helix 57	AG3	L	79	89	Right-handed alpha
Helix 58	AG4	L	90	97	Right-handed alpha
Helix 59	AG5	L	112	116	Right-handed 310
Helix 60	AG6	M	34	42	Right-handed alpha
Helix 61	AG7	M	52	81	Right-handed alpha
Helix 62	AG8	M	87	99	Right-handed alpha
Helix 63	AG9	M	101	122	Right-handed alpha

There are 17 sheets in PDB entry 28OE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	D	162	167	anti-parallel
Strand 4	D	130	138	anti-parallel
Strand 5	D	221	229	parallel
Strand 6	D	189	195	anti-parallel
Strand 7	D	198	199	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	137	143	anti-parallel
Strand 3	C	246	250	anti-parallel
Strand 4	C	226	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	D	5	8	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	56	57	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	100	102	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	28	31	anti-parallel
Strand 3	D	69	71	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	25	first strand
Strand 2	E	32	38	anti-parallel
Strand 3	E	49	55	anti-parallel
Strand 4	E	66	69	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	G	80	81	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	G	45	46	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	98	first strand
Strand 2	L	100	102	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	43	first strand
Strand 2	I	85	86	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	78	first strand
Strand 2	I	50	51	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	102	first strand
Strand 2	K	96	98	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	83	84	first strand
Strand 2	K	80	81	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	119	first strand
Strand 2	K	45	46	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	M	85	86	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	78	first strand
Strand 2	M	50	51	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28OE

Analysis of interatomic Contacts of Structural Units in PDB entry:
28OE