Analysis of interatomic Contacts of Structural Units in PDB entry:
28PB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28PB entry

There are 2 chains in PDB entry 28PB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5PRO 281
B
 THR 4THR 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 28PB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
16 21Right-handed 310
Helix 3
AA3
A
27 33Right-handed alpha
Helix 4
AA4
A
36 39Right-handed 310
Helix 5
AA5
A
40 45Right-handed alpha
Helix 6
AA6
A
68 77Right-handed alpha
Helix 7
AA7
A
85 90Right-handed alpha
Helix 8
AA8
A
102 107Right-handed alpha
Helix 9
AA9
A
107 112Right-handed alpha
Helix 10
AB1
A
115 124Right-handed alpha
Helix 11
AB2
A
129 137Right-handed alpha
Helix 12
AB3
A
138 143Right-handed alpha
Helix 13
AB4
A
171 178Right-handed alpha
Helix 14
AB5
A
184 189Right-handed 310
Helix 15
AB6
A
198 210Right-handed alpha
Helix 16
AB7
A
232 236Right-handed 310
Helix 17
AB8
A
237 242Right-handed alpha
Helix 18
AB9
A
272 279Right-handed alpha
Helix 19
AC1
B
5 13Right-handed alpha
Helix 20
AC2
B
16 21Right-handed 310
Helix 21
AC3
B
27 33Right-handed alpha
Helix 22
AC4
B
40 45Right-handed alpha
Helix 23
AC5
B
68 77Right-handed alpha
Helix 24
AC6
B
85 90Right-handed alpha
Helix 25
AC7
B
102 107Right-handed alpha
Helix 26
AC8
B
109 113Right-handed 310
Helix 27
AC9
B
115 124Right-handed alpha
Helix 28
AD1
B
129 137Right-handed alpha
Helix 29
AD2
B
138 143Right-handed alpha
Helix 30
AD3
B
171 178Right-handed alpha
Helix 31
AD4
B
184 189Right-handed 310
Helix 32
AD5
B
198 208Right-handed alpha
Helix 33
AD6
B
209 212Right-handed 310
Helix 34
AD7
B
232 236Right-handed 310
Helix 35
AD8
B
237 242Right-handed alpha
Helix 36
AD9
B
272 278Right-handed alpha
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There are 4 sheets in PDB entry 28PB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
149 158anti-parallel
Strand 3
A
214 222anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
149 158anti-parallel
Strand 3
A
252 257parallel
Strand 4
A
263 267anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
149 158anti-parallel
Strand 3
B
214 222anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
149 158anti-parallel
Strand 3
B
252 257parallel
Strand 4
B
263 267anti-parallel
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