Analysis of interatomic Contacts of Structural Units in PDB entry:
28PQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28PQ entry

There are 2 chains in PDB entry 28PQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 17ALA 750
B
 THR 18ALA 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 28PQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
51 64Right-handed alpha
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
82 104Right-handed alpha
Helix 5
AA5
A
107 111Right-handed 310
Helix 6
AA6
A
112 128Right-handed alpha
Helix 7
AA7
A
133 136Right-handed 310
Helix 8
AA8
A
142 161Right-handed alpha
Helix 9
AA9
A
163 165Right-handed 310
Helix 10
AB1
A
166 173Right-handed alpha
Helix 11
AB2
A
182 202Right-handed alpha
Helix 12
AB3
A
218 222Right-handed 310
Helix 13
AB4
A
226 253Right-handed alpha
Helix 14
AB5
A
268 272Right-handed 310
Helix 15
AB6
A
276 281Right-handed alpha
Helix 16
AB7
A
282 307Right-handed alpha
Helix 17
AB8
A
317 321Right-handed 310
Helix 18
AB9
A
323 355Right-handed alpha
Helix 19
AC1
A
362 390Right-handed alpha
Helix 20
AC2
A
394 396Right-handed 310
Helix 21
AC3
A
397 402Right-handed alpha
Helix 22
AC4
A
412 439Right-handed alpha
Helix 23
AC5
A
473 489Right-handed alpha
Helix 24
AC6
A
491 509Right-handed alpha
Helix 25
AC7
A
512 537Right-handed alpha
Helix 26
AC8
A
545 555Right-handed alpha
Helix 27
AC9
A
561 568Right-handed alpha
Helix 28
AD1
A
571 576Right-handed alpha
Helix 29
AD2
A
580 585Right-handed 310
Helix 30
AD3
A
586 603Right-handed alpha
Helix 31
AD4
A
605 612Right-handed alpha
Helix 32
AD5
A
613 621Right-handed alpha
Helix 33
AD6
A
624 654Right-handed alpha
Helix 34
AD7
A
660 682Right-handed alpha
Helix 35
AD8
A
682 697Right-handed alpha
Helix 36
AD9
A
698 703Right-handed alpha
Helix 37
AE1
A
704 709Right-handed alpha
Helix 38
AE2
A
710 720Right-handed alpha
Helix 39
AE3
A
720 744Right-handed alpha
Helix 40
AE4
A
746 750Right-handed 310
Helix 41
AE5
B
19 33Right-handed alpha
Helix 42
AE6
B
51 64Right-handed alpha
Helix 43
AE7
B
65 69Right-handed 310
Helix 44
AE8
B
82 104Right-handed alpha
Helix 45
AE9
B
107 111Right-handed 310
Helix 46
AF1
B
112 128Right-handed alpha
Helix 47
AF2
B
133 136Right-handed 310
Helix 48
AF3
B
142 161Right-handed alpha
Helix 49
AF4
B
163 165Right-handed 310
Helix 50
AF5
B
166 173Right-handed alpha
Helix 51
AF6
B
182 202Right-handed alpha
Helix 52
AF7
B
218 222Right-handed 310
Helix 53
AF8
B
226 253Right-handed alpha
Helix 54
AF9
B
268 272Right-handed 310
Helix 55
AG1
B
276 281Right-handed alpha
Helix 56
AG2
B
282 307Right-handed alpha
Helix 57
AG3
B
317 321Right-handed 310
Helix 58
AG4
B
323 355Right-handed alpha
Helix 59
AG5
B
362 390Right-handed alpha
Helix 60
AG6
B
394 396Right-handed 310
Helix 61
AG7
B
397 402Right-handed alpha
Helix 62
AG8
B
412 440Right-handed alpha
Helix 63
AG9
B
473 488Right-handed alpha
Helix 64
AH1
B
494 509Right-handed alpha
Helix 65
AH2
B
512 537Right-handed alpha
Helix 66
AH3
B
545 555Right-handed alpha
Helix 67
AH4
B
561 568Right-handed alpha
Helix 68
AH5
B
571 576Right-handed alpha
Helix 69
AH6
B
580 585Right-handed 310
Helix 70
AH7
B
586 603Right-handed alpha
Helix 71
AH8
B
605 612Right-handed alpha
Helix 72
AH9
B
613 621Right-handed alpha
Helix 73
AI1
B
624 654Right-handed alpha
Helix 74
AI2
B
660 682Right-handed alpha
Helix 75
AI3
B
682 697Right-handed alpha
Helix 76
AI4
B
698 703Right-handed alpha
Helix 77
AI5
B
704 709Right-handed alpha
Helix 78
AI6
B
710 720Right-handed alpha
Helix 79
AI7
B
720 744Right-handed alpha
Helix 80
AI8
B
746 750Right-handed 310
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There are 4 sheets in PDB entry 28PQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
138 141parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
138 141parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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