Analysis of interatomic Contacts of Structural Units in PDB entry:
28SV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28SV entry

There are 2 chains in PDB entry 28SV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 288
B
 MET 1SER 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 28SV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 24Right-handed alpha
Helix 2
AA2
A
26 33Right-handed alpha
Helix 3
AA3
A
36 62Right-handed alpha
Helix 4
AA4
A
65 78Right-handed alpha
Helix 5
AA5
A
82 91Right-handed alpha
Helix 6
AA6
A
94 122Right-handed alpha
Helix 7
AA7
A
123 126Right-handed 310
Helix 8
AA8
A
132 157Right-handed alpha
Helix 9
AA9
A
157 182Right-handed alpha
Helix 10
AB1
A
184 186Right-handed 310
Helix 11
AB2
A
187 194Right-handed alpha
Helix 12
AB3
A
195 220Right-handed alpha
Helix 13
AB4
A
223 236Right-handed alpha
Helix 14
AB5
A
238 250Right-handed alpha
Helix 15
AB6
A
251 259Right-handed alpha
Helix 16
AB7
A
259 287Right-handed alpha
Helix 17
AB8
B
3 24Right-handed alpha
Helix 18
AB9
B
26 33Right-handed alpha
Helix 19
AC1
B
36 62Right-handed alpha
Helix 20
AC2
B
65 77Right-handed alpha
Helix 21
AC3
B
82 91Right-handed alpha
Helix 22
AC4
B
94 122Right-handed alpha
Helix 23
AC5
B
123 125Right-handed 310
Helix 24
AC6
B
132 157Right-handed alpha
Helix 25
AC7
B
157 182Right-handed alpha
Helix 26
AC8
B
183 186Right-handed 310
Helix 27
AC9
B
187 193Right-handed alpha
Helix 28
AD1
B
195 220Right-handed alpha
Helix 29
AD2
B
223 236Right-handed alpha
Helix 30
AD3
B
238 250Right-handed alpha
Helix 31
AD4
B
254 288Right-handed alpha
Back to top of page
There are no sheets in PDB entry 28SV
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il