Analysis of interatomic Contacts of Structural Units in PDB entry:
28VJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28VJ entry

There are 2 chains in PDB entry 28VJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LEU 66
B
 LYS 3ARG 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 28VJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
54 59Right-handed 310
Helix 3
AA3
B
4 23Right-handed alpha
Helix 4
AA4
B
25 34Right-handed alpha
Helix 5
AA5
B
36 65Right-handed alpha
Helix 6
AA6
B
66 88Right-handed alpha
Helix 7
AA7
B
90 120Right-handed alpha
Helix 8
AA8
B
121 151Right-handed alpha
Helix 9
AA9
B
156 177Right-handed alpha
Helix 10
AB1
B
200 203Right-handed 310
Helix 11
AB2
B
204 224Right-handed alpha
Helix 12
AB3
B
224 234Right-handed alpha
Helix 13
AB4
B
236 258Right-handed alpha
Helix 14
AB5
B
258 266Right-handed alpha
Helix 15
AB6
B
267 289Right-handed alpha
Helix 16
AB7
B
291 302Right-handed alpha
Helix 17
AB8
B
303 321Right-handed alpha
Helix 18
AB9
B
324 354Right-handed alpha
Helix 19
AC1
B
356 380Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 28VJ.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
35 43anti-parallel
Strand 3
A
24 32anti-parallel
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