Analysis of interatomic Contacts of Structural Units in PDB entry:
28WB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28WB entry

There is 1 chain in PDB entry 28WB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 26PRO 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 28WB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 42Right-handed alpha
Helix 2
AA2
A
91 95Right-handed 310
Helix 3
AA3
A
135 141Right-handed 310
Helix 4
AA4
A
161 165Right-handed 310
Helix 5
AA5
A
183 189Right-handed 310
Helix 6
AA6
A
206 210Right-handed 310
Helix 7
AA7
A
229 233Right-handed 310
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There are 4 sheets in PDB entry 28WB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
100 102parallel
Strand 4
A
122 124parallel
Strand 5
A
146 148parallel
Strand 6
A
170 172parallel
Strand 7
A
194 196parallel
Strand 8
A
216 218parallel
Strand 9
A
236 238parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
107 109parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
153 156parallel
Strand 3
A
177 180parallel
Strand 4
A
201 202parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
243 244parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il