Analysis of interatomic Contacts of Structural Units in PDB entry:
28WY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28WY entry

There are 3 chains in PDB entry 28WY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 55VAL 388
B
 ILE 6CYS 399
C
 GLU 15GLY 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 28WY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 72Right-handed alpha
Helix 2
AA2
A
76 80Right-handed 310
Helix 3
AA3
A
92 96Right-handed 310
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
117 134Right-handed alpha
Helix 6
AA6
A
141 160Right-handed alpha
Helix 7
AA7
A
166 186Right-handed alpha
Helix 8
AA8
A
197 218Right-handed alpha
Helix 9
AA9
A
224 236Right-handed alpha
Helix 10
AB1
A
239 248Right-handed alpha
Helix 11
AB2
A
250 256Right-handed alpha
Helix 12
AB3
A
256 272Right-handed alpha
Helix 13
AB4
A
273 284Right-handed alpha
Helix 14
AB5
A
285 312Right-handed alpha
Helix 15
AB6
A
321 328Right-handed alpha
Helix 16
AB7
A
332 344Right-handed alpha
Helix 17
AB8
A
374 379Right-handed alpha
Helix 18
AB9
A
383 388Right-handed alpha
Helix 19
AC1
B
7 19Right-handed alpha
Helix 20
AC2
B
21 30Right-handed alpha
Helix 21
AC3
B
48 54Right-handed alpha
Helix 22
AC4
B
55 75Right-handed alpha
Helix 23
AC5
B
76 98Right-handed alpha
Helix 24
AC6
B
103 128Right-handed alpha
Helix 25
AC7
B
137 155Right-handed alpha
Helix 26
AC8
B
156 158Right-handed 310
Helix 27
AC9
B
164 182Right-handed alpha
Helix 28
AD1
B
184 197Right-handed alpha
Helix 29
AD2
B
205 223Right-handed alpha
Helix 30
AD3
B
225 240Right-handed alpha
Helix 31
AD4
B
244 263Right-handed alpha
Helix 32
AD5
B
267 275Right-handed alpha
Helix 33
AD6
B
276 289Right-handed alpha
Helix 34
AD7
B
290 301Right-handed alpha
Helix 35
AD8
B
301 308Right-handed alpha
Helix 36
AD9
B
310 334Right-handed alpha
Helix 37
AE1
B
340 350Right-handed alpha
Helix 38
AE2
B
356 370Right-handed alpha
Helix 39
AE3
B
394 399Right-handed alpha
Helix 40
AE4
C
33 37Right-handed 310
Helix 41
AE5
C
50 64Right-handed alpha
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There are 3 sheets in PDB entry 28WY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 320first strand
Strand 2
A
352 355anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
C
39 40anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
383 386anti-parallel
Strand 3
B
375 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il