Analysis of interatomic Contacts of Structural Units in PDB entry:
28YL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28YL entry

There are 4 chains in PDB entry 28YL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1LEU 255
B
 MET 1LEU 255
A
 GLY -2LEU 255
C
 SER 2LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 28YL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
13 27Right-handed alpha
Helix 2
AA2
D
36 47Right-handed alpha
Helix 3
AA3
D
62 78Right-handed alpha
Helix 4
AA4
D
104 113Right-handed alpha
Helix 5
AA5
D
113 131Right-handed alpha
Helix 6
AA6
D
141 146Right-handed alpha
Helix 7
AA7
D
150 172Right-handed alpha
Helix 8
AA8
D
188 193Right-handed 310
Helix 9
AA9
D
205 213Right-handed alpha
Helix 10
AB1
D
220 234Right-handed alpha
Helix 11
AB2
B
13 27Right-handed alpha
Helix 12
AB3
B
36 47Right-handed alpha
Helix 13
AB4
B
62 78Right-handed alpha
Helix 14
AB5
B
104 113Right-handed alpha
Helix 15
AB6
B
113 131Right-handed alpha
Helix 16
AB7
B
141 146Right-handed alpha
Helix 17
AB8
B
150 172Right-handed alpha
Helix 18
AB9
B
188 194Right-handed 310
Helix 19
AC1
B
204 213Right-handed alpha
Helix 20
AC2
B
220 234Right-handed alpha
Helix 21
AC3
A
13 27Right-handed alpha
Helix 22
AC4
A
36 47Right-handed alpha
Helix 23
AC5
A
62 78Right-handed alpha
Helix 24
AC6
A
104 113Right-handed alpha
Helix 25
AC7
A
113 131Right-handed alpha
Helix 26
AC8
A
141 146Right-handed alpha
Helix 27
AC9
A
150 172Right-handed alpha
Helix 28
AD1
A
204 213Right-handed alpha
Helix 29
AD2
A
220 234Right-handed alpha
Helix 30
AD3
C
13 27Right-handed alpha
Helix 31
AD4
C
36 47Right-handed alpha
Helix 32
AD5
C
62 78Right-handed alpha
Helix 33
AD6
C
104 113Right-handed alpha
Helix 34
AD7
C
113 131Right-handed alpha
Helix 35
AD8
C
141 146Right-handed alpha
Helix 36
AD9
C
150 172Right-handed alpha
Helix 37
AE1
C
206 213Right-handed alpha
Helix 38
AE2
C
220 234Right-handed alpha
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There are 4 sheets in PDB entry 28YL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 57first strand
Strand 2
D
29 34parallel
Strand 3
D
5 9parallel
Strand 4
D
81 86parallel
Strand 5
D
133 138parallel
Strand 6
D
176 183parallel
Strand 7
D
243 246parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
29 34parallel
Strand 3
B
5 9parallel
Strand 4
B
81 86parallel
Strand 5
B
133 138parallel
Strand 6
B
176 183parallel
Strand 7
B
243 246parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
29 34parallel
Strand 3
A
5 9parallel
Strand 4
A
81 86parallel
Strand 5
A
133 138parallel
Strand 6
A
176 183parallel
Strand 7
A
243 246parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 57first strand
Strand 2
C
29 34parallel
Strand 3
C
5 9parallel
Strand 4
C
81 86parallel
Strand 5
C
133 138parallel
Strand 6
C
176 183parallel
Strand 7
C
243 246parallel
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