Analysis of interatomic Contacts of Structural Units in PDB entry:
29II


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 29II entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 29II (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3SER 233
B
 ASP 3SER 233
C
 ARG 50LYS 52
C
 SER 54MET 77
C
 PHE 79PHE 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 29II. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
19 32Right-handed alpha
Helix 3
AA3
A
38 72Right-handed alpha
Helix 4
AA4
A
76 107Right-handed alpha
Helix 5
AA5
A
107 112Right-handed alpha
Helix 6
AA6
A
114 136Right-handed alpha
Helix 7
AA7
A
137 163Right-handed alpha
Helix 8
AA8
A
167 185Right-handed alpha
Helix 9
AA9
A
187 204Right-handed alpha
Helix 10
AB1
A
205 209Right-handed 310
Helix 11
AB2
A
210 232Right-handed alpha
Helix 12
AB3
B
4 18Right-handed alpha
Helix 13
AB4
B
19 32Right-handed alpha
Helix 14
AB5
B
38 73Right-handed alpha
Helix 15
AB6
B
76 107Right-handed alpha
Helix 16
AB7
B
114 136Right-handed alpha
Helix 17
AB8
B
137 163Right-handed alpha
Helix 18
AB9
B
167 185Right-handed alpha
Helix 19
AC1
B
187 204Right-handed alpha
Helix 20
AC2
B
205 209Right-handed 310
Helix 21
AC3
B
210 232Right-handed alpha
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There are no sheets in PDB entry 29II
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