Analysis of interatomic Contacts of Structural Units in PDB entry:
29KN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 29KN entry

There are 12 chains in PDB entry 29KN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 451
B	GLY 45	PHE 450
C	THR 17	MET 443
D	ALA 24	LYS 444
E	GLY 45	GLN 447
F	ALA 6	MET 443
G	PRO 99	ASP 242
H	ALA 2	ALA 193
I	THR 4	HIS 194
J	ALA 2	ALA 193
K	THR 4	VAL 190
L	THR 4	ALA 193

There are132 helices in PDB entry 29KN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	58	Right-handed alpha
Helix 2	AA2	A	75	88	Right-handed alpha
Helix 3	AA3	A	99	101	Right-handed 310
Helix 4	AA4	A	107	118	Right-handed alpha
Helix 5	AA5	A	240	247	Right-handed alpha
Helix 6	AA6	A	273	289	Right-handed alpha
Helix 7	AA7	A	303	307	Right-handed 310
Helix 8	AA8	A	308	320	Right-handed alpha
Helix 9	AA9	A	347	350	Right-handed 310
Helix 10	AB1	A	351	356	Right-handed alpha
Helix 11	AB2	A	367	383	Right-handed alpha
Helix 12	AB3	A	387	401	Right-handed alpha
Helix 13	AB4	A	402	408	Right-handed alpha
Helix 14	AB5	A	409	421	Right-handed alpha
Helix 15	AB6	A	426	437	Right-handed alpha
Helix 16	AB7	A	439	451	Right-handed alpha
Helix 17	AB8	B	49	66	Right-handed alpha
Helix 18	AB9	B	82	95	Right-handed alpha
Helix 19	AC1	B	106	109	Right-handed 310
Helix 20	AC2	B	114	126	Right-handed alpha
Helix 21	AC3	B	175	185	Right-handed alpha
Helix 22	AC4	B	210	217	Right-handed 310
Helix 23	AC5	B	243	250	Right-handed alpha
Helix 24	AC6	B	269	287	Right-handed alpha
Helix 25	AC7	B	300	304	Right-handed 310
Helix 26	AC8	B	305	316	Right-handed alpha
Helix 27	AC9	B	347	352	Right-handed alpha
Helix 28	AD1	B	363	379	Right-handed alpha
Helix 29	AD2	B	383	397	Right-handed alpha
Helix 30	AD3	B	398	416	Right-handed alpha
Helix 31	AD4	B	422	431	Right-handed alpha
Helix 32	AD5	B	435	450	Right-handed alpha
Helix 33	AD6	C	17	21	Right-handed 310
Helix 34	AD7	C	51	66	Right-handed alpha
Helix 35	AD8	C	82	95	Right-handed alpha
Helix 36	AD9	C	104	108	Right-handed 310
Helix 37	AE1	C	114	126	Right-handed alpha
Helix 38	AE2	C	175	185	Right-handed alpha
Helix 39	AE3	C	210	212	Right-handed 310
Helix 40	AE4	C	244	251	Right-handed alpha
Helix 41	AE5	C	258	263	Right-handed alpha
Helix 42	AE6	C	269	286	Right-handed alpha
Helix 43	AE7	C	300	304	Right-handed 310
Helix 44	AE8	C	305	317	Right-handed alpha
Helix 45	AE9	C	347	352	Right-handed alpha
Helix 46	AF1	C	363	379	Right-handed alpha
Helix 47	AF2	C	383	397	Right-handed alpha
Helix 48	AF3	C	398	416	Right-handed alpha
Helix 49	AF4	C	422	433	Right-handed alpha
Helix 50	AF5	C	435	443	Right-handed alpha
Helix 51	AF6	D	49	66	Right-handed alpha
Helix 52	AF7	D	82	95	Right-handed alpha
Helix 53	AF8	D	114	125	Right-handed alpha
Helix 54	AF9	D	175	185	Right-handed alpha
Helix 55	AG1	D	210	212	Right-handed 310
Helix 56	AG2	D	244	252	Right-handed alpha
Helix 57	AG3	D	258	262	Right-handed 310
Helix 58	AG4	D	269	287	Right-handed alpha
Helix 59	AG5	D	300	304	Right-handed 310
Helix 60	AG6	D	305	317	Right-handed alpha
Helix 61	AG7	D	347	352	Right-handed alpha
Helix 62	AG8	D	363	378	Right-handed alpha
Helix 63	AG9	D	383	397	Right-handed alpha
Helix 64	AH1	D	398	416	Right-handed alpha
Helix 65	AH2	D	424	433	Right-handed alpha
Helix 66	AH3	D	435	444	Right-handed alpha
Helix 67	AH4	E	49	66	Right-handed alpha
Helix 68	AH5	E	82	94	Right-handed alpha
Helix 69	AH6	E	114	125	Right-handed alpha
Helix 70	AH7	E	175	185	Right-handed alpha
Helix 71	AH8	E	210	212	Right-handed 310
Helix 72	AH9	E	244	252	Right-handed alpha
Helix 73	AI1	E	269	287	Right-handed alpha
Helix 74	AI2	E	300	304	Right-handed 310
Helix 75	AI3	E	305	316	Right-handed alpha
Helix 76	AI4	E	347	352	Right-handed alpha
Helix 77	AI5	E	365	378	Right-handed alpha
Helix 78	AI6	E	383	397	Right-handed alpha
Helix 79	AI7	E	398	416	Right-handed alpha
Helix 80	AI8	E	422	433	Right-handed alpha
Helix 81	AI9	E	435	447	Right-handed alpha
Helix 82	AJ1	F	17	23	Right-handed alpha
Helix 83	AJ2	F	49	66	Right-handed alpha
Helix 84	AJ3	F	82	95	Right-handed alpha
Helix 85	AJ4	F	106	109	Right-handed 310
Helix 86	AJ5	F	114	125	Right-handed alpha
Helix 87	AJ6	F	175	185	Right-handed alpha
Helix 88	AJ7	F	210	212	Right-handed 310
Helix 89	AJ8	F	243	251	Right-handed alpha
Helix 90	AJ9	F	258	262	Right-handed 310
Helix 91	AK1	F	269	287	Right-handed alpha
Helix 92	AK2	F	300	304	Right-handed 310
Helix 93	AK3	F	305	316	Right-handed alpha
Helix 94	AK4	F	347	352	Right-handed alpha
Helix 95	AK5	F	363	379	Right-handed alpha
Helix 96	AK6	F	383	397	Right-handed alpha
Helix 97	AK7	F	398	416	Right-handed alpha
Helix 98	AK8	F	422	433	Right-handed alpha
Helix 99	AK9	F	435	443	Right-handed alpha
Helix 100	AL1	G	101	112	Right-handed alpha
Helix 101	AL2	G	117	126	Right-handed alpha
Helix 102	AL3	G	128	135	Right-handed alpha
Helix 103	AL4	G	142	153	Right-handed alpha
Helix 104	AL5	G	162	172	Right-handed alpha
Helix 105	AL6	G	175	182	Right-handed alpha
Helix 106	AL7	G	184	197	Right-handed alpha
Helix 107	AL8	G	230	241	Right-handed alpha
Helix 108	AL9	H	3	13	Right-handed alpha
Helix 109	AM1	H	112	114	Right-handed 310
Helix 110	AM2	H	142	148	Right-handed alpha
Helix 111	AM3	H	153	155	Right-handed 310
Helix 112	AM4	H	173	190	Right-handed alpha
Helix 113	AM5	I	5	13	Right-handed alpha
Helix 114	AM6	I	112	114	Right-handed 310
Helix 115	AM7	I	142	148	Right-handed alpha
Helix 116	AM8	I	153	155	Right-handed 310
Helix 117	AM9	I	173	190	Right-handed alpha
Helix 118	AN1	J	3	13	Right-handed alpha
Helix 119	AN2	J	112	114	Right-handed 310
Helix 120	AN3	J	142	148	Right-handed alpha
Helix 121	AN4	J	153	155	Right-handed 310
Helix 122	AN5	J	173	190	Right-handed alpha
Helix 123	AN6	K	5	13	Right-handed alpha
Helix 124	AN7	K	112	114	Right-handed 310
Helix 125	AN8	K	142	148	Right-handed alpha
Helix 126	AN9	K	153	155	Right-handed 310
Helix 127	AO1	K	173	190	Right-handed alpha
Helix 128	AO2	L	5	13	Right-handed alpha
Helix 129	AO3	L	112	114	Right-handed 310
Helix 130	AO4	L	142	148	Right-handed alpha
Helix 131	AO5	L	153	155	Right-handed 310
Helix 132	AO6	L	173	190	Right-handed alpha

There are 44 sheets in PDB entry 29KN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	39	40	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	298	302	parallel
Strand 3	A	326	331	parallel
Strand 4	A	65	69	parallel
Strand 5	A	358	362	parallel
Strand 6	B	433	434	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	120	124	anti-parallel
Strand 3	A	292	296	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	345	346	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	295	299	parallel
Strand 3	B	323	328	parallel
Strand 4	B	72	76	parallel
Strand 5	B	354	358	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	291	293	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	202	208	parallel
Strand 3	B	191	196	anti-parallel
Strand 4	B	137	148	anti-parallel
Strand 5	B	158	164	anti-parallel
Strand 6	B	169	174	anti-parallel
Strand 7	H	84	86	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	334	first strand
Strand 2	B	341	343	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	46	47	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	295	298	parallel
Strand 3	C	323	328	parallel
Strand 4	C	72	76	parallel
Strand 5	C	354	358	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	128	131	anti-parallel
Strand 3	C	290	292	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	202	208	parallel
Strand 3	C	191	195	anti-parallel
Strand 4	C	137	146	anti-parallel
Strand 5	C	233	234	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	202	208	parallel
Strand 3	C	191	195	anti-parallel
Strand 4	C	137	146	anti-parallel
Strand 5	C	160	164	anti-parallel
Strand 6	C	169	174	anti-parallel
Strand 7	I	84	86	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	334	first strand
Strand 2	C	341	343	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	420	421	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	46	47	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	295	299	parallel
Strand 3	D	323	328	parallel
Strand 4	D	72	76	parallel
Strand 5	D	354	358	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	202	208	parallel
Strand 3	D	191	196	anti-parallel
Strand 4	D	127	146	anti-parallel
Strand 5	D	290	293	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	243	first strand
Strand 2	D	127	146	anti-parallel
Strand 3	D	160	164	anti-parallel
Strand 4	D	169	174	anti-parallel
Strand 5	J	84	86	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	341	343	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	295	299	parallel
Strand 3	E	323	328	parallel
Strand 4	E	72	76	parallel
Strand 5	E	354	358	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	225	first strand
Strand 2	E	202	208	parallel
Strand 3	E	191	196	anti-parallel
Strand 4	E	127	148	anti-parallel
Strand 5	E	291	293	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	243	first strand
Strand 2	E	127	148	anti-parallel
Strand 3	E	158	164	anti-parallel
Strand 4	E	169	174	anti-parallel
Strand 5	K	84	86	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	334	first strand
Strand 2	E	341	343	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	46	47	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	104	first strand
Strand 2	F	295	299	parallel
Strand 3	F	323	328	parallel
Strand 4	F	72	76	parallel
Strand 5	F	354	358	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	225	first strand
Strand 2	F	202	208	parallel
Strand 3	F	191	196	anti-parallel
Strand 4	F	129	146	anti-parallel
Strand 5	F	289	291	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	233	242	first strand
Strand 2	F	129	146	anti-parallel
Strand 3	F	160	164	anti-parallel
Strand 4	F	169	174	anti-parallel
Strand 5	L	84	86	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	334	first strand
Strand 2	F	341	343	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	68	first strand
Strand 2	H	47	53	anti-parallel
Strand 3	H	35	41	anti-parallel
Strand 4	H	23	29	anti-parallel
Strand 5	H	14	20	anti-parallel
Strand 6	H	192	193	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	95	first strand
Strand 2	H	101	107	anti-parallel
Strand 3	H	165	171	anti-parallel
Strand 4	H	157	162	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	121	first strand
Strand 2	H	126	131	anti-parallel
Strand 3	H	137	140	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	68	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	35	41	anti-parallel
Strand 4	I	23	29	anti-parallel
Strand 5	I	14	20	anti-parallel
Strand 6	I	192	193	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	92	95	first strand
Strand 2	I	101	107	anti-parallel
Strand 3	I	165	171	anti-parallel
Strand 4	I	157	162	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	116	121	first strand
Strand 2	I	126	131	anti-parallel
Strand 3	I	137	140	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	47	53	anti-parallel
Strand 3	J	35	41	anti-parallel
Strand 4	J	23	29	anti-parallel
Strand 5	J	14	20	anti-parallel
Strand 6	J	192	193	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	92	95	first strand
Strand 2	J	101	107	anti-parallel
Strand 3	J	165	171	anti-parallel
Strand 4	J	157	162	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	116	121	first strand
Strand 2	J	126	131	anti-parallel
Strand 3	J	137	140	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	14	20	first strand
Strand 2	K	23	29	anti-parallel
Strand 3	K	35	41	anti-parallel
Strand 4	K	47	53	anti-parallel
Strand 5	K	65	68	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	92	95	first strand
Strand 2	K	101	107	anti-parallel
Strand 3	K	165	171	anti-parallel
Strand 4	K	157	162	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	116	121	first strand
Strand 2	K	126	131	anti-parallel
Strand 3	K	137	140	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	68	first strand
Strand 2	L	47	53	anti-parallel
Strand 3	L	35	41	anti-parallel
Strand 4	L	23	29	anti-parallel
Strand 5	L	14	20	anti-parallel
Strand 6	L	192	193	parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	92	95	first strand
Strand 2	L	101	107	anti-parallel
Strand 3	L	165	171	anti-parallel
Strand 4	L	157	162	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	121	first strand
Strand 2	L	126	131	anti-parallel
Strand 3	L	137	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 29KN

Analysis of interatomic Contacts of Structural Units in PDB entry:
29KN