Analysis of interatomic Contacts of Structural Units in PDB entry:
29LA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 29LA entry

There is 1 chain in PDB entry 29LA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11ALA 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 29LA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 29Right-handed 310
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
41 46Right-handed alpha
Helix 4
AA4
A
84 90Right-handed alpha
Helix 5
AA5
A
97 110Right-handed alpha
Helix 6
AA6
A
125 136Right-handed alpha
Helix 7
AA7
A
153 165Right-handed alpha
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
195 211Right-handed alpha
Helix 10
AB1
A
213 219Right-handed alpha
Helix 11
AB2
A
220 223Right-handed 310
Helix 12
AB3
A
226 231Right-handed alpha
Helix 13
AB4
A
237 247Right-handed alpha
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There are 3 sheets in PDB entry 29LA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
53 58parallel
Strand 3
A
172 178parallel
Strand 4
A
16 21parallel
Strand 5
A
269 274anti-parallel
Strand 6
A
251 257anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
117 119parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
265 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il