Analysis of interatomic Contacts of Structural Units in PDB entry:
29LV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 29LV entry

There are 2 chains in PDB entry 29LV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 17PRO 174
B
 SER 17ARG 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 29LV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
97 105Right-handed alpha
Helix 3
AA3
A
111 117Right-handed alpha
Helix 4
AA4
A
117 125Right-handed alpha
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
145 159Right-handed alpha
Helix 7
AA7
A
160 167Right-handed alpha
Helix 8
AA8
A
168 173Right-handed 310
Helix 9
AA9
B
18 30Right-handed alpha
Helix 10
AB1
B
97 105Right-handed alpha
Helix 11
AB2
B
111 117Right-handed alpha
Helix 12
AB3
B
117 125Right-handed alpha
Helix 13
AB4
B
133 143Right-handed alpha
Helix 14
AB5
B
143 159Right-handed alpha
Helix 15
AB6
B
160 167Right-handed alpha
Helix 16
AB7
B
169 173Right-handed 310
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There are 2 sheets in PDB entry 29LV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
77 80anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
60 66anti-parallel
Strand 4
B
77 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il