Analysis of interatomic Contacts of Structural Units in PDB entry:
29MJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 29MJ entry

There are 3 chains in PDB entry 29MJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	PHE 438
B	ASP 3	PHE 438
C	ASP 3	GLN 428

There are 36 helices in PDB entry 29MJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed 310
Helix 2	AA2	A	92	112	Right-handed alpha
Helix 3	AA3	A	146	148	Right-handed 310
Helix 4	AA4	A	234	243	Right-handed alpha
Helix 5	AA5	A	246	268	Right-handed alpha
Helix 6	AA6	A	276	278	Right-handed 310
Helix 7	AA7	A	317	322	Right-handed alpha
Helix 8	AA8	A	328	345	Right-handed alpha
Helix 9	AA9	A	373	384	Right-handed alpha
Helix 10	AB1	A	398	404	Right-handed alpha
Helix 11	AB2	A	405	409	Right-handed 310
Helix 12	AB3	A	412	418	Right-handed alpha
Helix 13	AB4	B	52	56	Right-handed 310
Helix 14	AB5	B	92	113	Right-handed alpha
Helix 15	AB6	B	146	148	Right-handed 310
Helix 16	AB7	B	234	243	Right-handed alpha
Helix 17	AB8	B	246	268	Right-handed alpha
Helix 18	AB9	B	276	278	Right-handed 310
Helix 19	AC1	B	317	322	Right-handed alpha
Helix 20	AC2	B	328	345	Right-handed alpha
Helix 21	AC3	B	373	384	Right-handed alpha
Helix 22	AC4	B	398	404	Right-handed alpha
Helix 23	AC5	B	405	409	Right-handed 310
Helix 24	AC6	B	412	418	Right-handed alpha
Helix 25	AC7	C	52	56	Right-handed 310
Helix 26	AC8	C	92	112	Right-handed alpha
Helix 27	AC9	C	146	148	Right-handed 310
Helix 28	AD1	C	234	243	Right-handed alpha
Helix 29	AD2	C	246	268	Right-handed alpha
Helix 30	AD3	C	276	278	Right-handed 310
Helix 31	AD4	C	317	322	Right-handed alpha
Helix 32	AD5	C	328	345	Right-handed alpha
Helix 33	AD6	C	373	384	Right-handed alpha
Helix 34	AD7	C	398	404	Right-handed alpha
Helix 35	AD8	C	405	409	Right-handed 310
Helix 36	AD9	C	412	418	Right-handed alpha

There are 9 sheets in PDB entry 29MJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	22	30	anti-parallel
Strand 3	A	6	15	anti-parallel
Strand 4	A	82	89	anti-parallel
Strand 5	A	72	79	anti-parallel
Strand 6	A	61	65	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	159	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	175	182	anti-parallel
Strand 4	A	222	228	anti-parallel
Strand 5	A	213	219	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	288	290	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	22	30	anti-parallel
Strand 3	B	6	15	anti-parallel
Strand 4	B	82	89	anti-parallel
Strand 5	B	72	79	anti-parallel
Strand 6	B	61	65	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	163	169	anti-parallel
Strand 3	B	175	181	anti-parallel
Strand 4	B	223	228	anti-parallel
Strand 5	B	213	217	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	288	290	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	22	30	anti-parallel
Strand 3	C	6	15	anti-parallel
Strand 4	C	82	89	anti-parallel
Strand 5	C	72	79	anti-parallel
Strand 6	C	61	65	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	155	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	175	182	anti-parallel
Strand 4	C	222	228	anti-parallel
Strand 5	C	213	218	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	282	first strand
Strand 2	C	288	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 29MJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
29MJ