Analysis of interatomic Contacts of Structural Units in PDB entry:
29QG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 29QG entry

There is 1 chain in PDB entry 29QG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASP 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 29QG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 58Right-handed alpha
Helix 2
AA2
A
68 88Right-handed alpha
Helix 3
AA3
A
94 101Right-handed alpha
Helix 4
AA4
A
115 120Right-handed alpha
Helix 5
AA5
A
124 127Right-handed 310
Helix 6
AA6
A
137 153Right-handed alpha
Helix 7
AA7
A
172 177Right-handed alpha
Helix 8
AA8
A
187 207Right-handed alpha
Helix 9
AA9
A
209 214Right-handed alpha
Helix 10
AB1
A
224 232Right-handed alpha
Helix 11
AB2
A
243 248Right-handed alpha
Helix 12
AB3
A
249 262Right-handed alpha
Helix 13
AB4
A
266 278Right-handed alpha
Helix 14
AB5
A
299 301Right-handed 310
Helix 15
AB6
A
302 322Right-handed alpha
Helix 16
AB7
A
345 358Right-handed alpha
Helix 17
AB8
A
374 378Right-handed 310
Helix 18
AB9
A
399 408Right-handed alpha
Helix 19
AC1
A
412 429Right-handed alpha
Helix 20
AC2
A
431 448Right-handed alpha
Helix 21
AC3
A
455 469Right-handed alpha
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There are 7 sheets in PDB entry 29QG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
287 292anti-parallel
Strand 3
A
279 284anti-parallel
Strand 4
A
160 165parallel
Strand 5
A
182 185anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
409 410anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
169 171anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
135 136anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 332first strand
Strand 2
A
335 340anti-parallel
Strand 3
A
235 238anti-parallel
Strand 4
A
371 373anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
360 362anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
394 398anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il