Analysis of interatomic Contacts of Structural Units in PDB entry:
29VY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 29VY entry

There are 3 chains in PDB entry 29VY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 29	PRO 541
B	ASN 29	PRO 541
C	ASN 29	PRO 539

There are 79 helices in PDB entry 29VY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	42	Right-handed alpha
Helix 2	AA2	A	59	67	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	89	104	Right-handed alpha
Helix 5	AA5	A	133	135	Right-handed 310
Helix 6	AA6	A	154	166	Right-handed alpha
Helix 7	AA7	A	180	188	Right-handed alpha
Helix 8	AA8	A	193	198	Right-handed alpha
Helix 9	AA9	A	199	202	Right-handed 310
Helix 10	AB1	A	218	223	Right-handed alpha
Helix 11	AB2	A	223	230	Right-handed alpha
Helix 12	AB3	A	234	238	Right-handed 310
Helix 13	AB4	A	265	280	Right-handed alpha
Helix 14	AB5	A	281	283	Right-handed 310
Helix 15	AB6	A	320	332	Right-handed alpha
Helix 16	AB7	A	333	336	Right-handed 310
Helix 17	AB8	A	338	342	Right-handed 310
Helix 18	AB9	A	346	354	Right-handed alpha
Helix 19	AC1	A	366	372	Right-handed 310
Helix 20	AC2	A	393	404	Right-handed alpha
Helix 21	AC3	A	405	407	Right-handed 310
Helix 22	AC4	A	421	425	Right-handed 310
Helix 23	AC5	A	451	453	Right-handed 310
Helix 24	AC6	A	454	469	Right-handed alpha
Helix 25	AC7	A	501	512	Right-handed alpha
Helix 26	AC8	A	514	526	Right-handed alpha
Helix 27	AC9	B	30	41	Right-handed alpha
Helix 28	AD1	B	59	67	Right-handed alpha
Helix 29	AD2	B	70	74	Right-handed 310
Helix 30	AD3	B	89	104	Right-handed alpha
Helix 31	AD4	B	133	135	Right-handed 310
Helix 32	AD5	B	154	166	Right-handed alpha
Helix 33	AD6	B	180	188	Right-handed alpha
Helix 34	AD7	B	193	198	Right-handed alpha
Helix 35	AD8	B	199	202	Right-handed 310
Helix 36	AD9	B	218	223	Right-handed alpha
Helix 37	AE1	B	223	230	Right-handed alpha
Helix 38	AE2	B	234	238	Right-handed 310
Helix 39	AE3	B	265	280	Right-handed alpha
Helix 40	AE4	B	281	283	Right-handed 310
Helix 41	AE5	B	320	332	Right-handed alpha
Helix 42	AE6	B	333	336	Right-handed 310
Helix 43	AE7	B	338	342	Right-handed 310
Helix 44	AE8	B	346	354	Right-handed alpha
Helix 45	AE9	B	366	372	Right-handed 310
Helix 46	AF1	B	393	404	Right-handed alpha
Helix 47	AF2	B	405	407	Right-handed 310
Helix 48	AF3	B	420	425	Right-handed 310
Helix 49	AF4	B	451	453	Right-handed 310
Helix 50	AF5	B	454	469	Right-handed alpha
Helix 51	AF6	B	499	512	Right-handed alpha
Helix 52	AF7	B	514	526	Right-handed alpha
Helix 53	AF8	C	30	41	Right-handed alpha
Helix 54	AF9	C	59	67	Right-handed alpha
Helix 55	AG1	C	70	74	Right-handed 310
Helix 56	AG2	C	89	104	Right-handed alpha
Helix 57	AG3	C	133	135	Right-handed 310
Helix 58	AG4	C	154	166	Right-handed alpha
Helix 59	AG5	C	180	188	Right-handed alpha
Helix 60	AG6	C	193	198	Right-handed alpha
Helix 61	AG7	C	199	202	Right-handed 310
Helix 62	AG8	C	218	223	Right-handed alpha
Helix 63	AG9	C	225	230	Right-handed alpha
Helix 64	AH1	C	234	238	Right-handed 310
Helix 65	AH2	C	265	280	Right-handed alpha
Helix 66	AH3	C	281	283	Right-handed 310
Helix 67	AH4	C	320	332	Right-handed alpha
Helix 68	AH5	C	333	336	Right-handed 310
Helix 69	AH6	C	338	342	Right-handed 310
Helix 70	AH7	C	346	354	Right-handed alpha
Helix 71	AH8	C	366	372	Right-handed 310
Helix 72	AH9	C	393	404	Right-handed alpha
Helix 73	AI1	C	405	407	Right-handed 310
Helix 74	AI2	C	420	425	Right-handed 310
Helix 75	AI3	C	451	453	Right-handed 310
Helix 76	AI4	C	454	469	Right-handed alpha
Helix 77	AI5	C	486	490	Right-handed 310
Helix 78	AI6	C	505	512	Right-handed alpha
Helix 79	AI7	C	514	526	Right-handed alpha

There are 15 sheets in PDB entry 29VY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	83	85	anti-parallel
Strand 3	A	127	131	parallel
Strand 4	A	106	110	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	146	150	anti-parallel
Strand 3	A	240	247	anti-parallel
Strand 4	A	204	210	anti-parallel
Strand 5	A	216	217	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	249	250	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	305	318	anti-parallel
Strand 3	A	255	257	anti-parallel
Strand 4	A	343	345	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	305	318	anti-parallel
Strand 3	A	287	299	anti-parallel
Strand 4	A	412	418	anti-parallel
Strand 5	A	441	449	anti-parallel
Strand 6	A	380	388	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	83	85	anti-parallel
Strand 3	B	127	131	parallel
Strand 4	B	106	110	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	141	first strand
Strand 2	B	146	150	anti-parallel
Strand 3	B	240	247	anti-parallel
Strand 4	B	204	210	anti-parallel
Strand 5	B	216	217	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	249	250	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	343	345	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	307	317	anti-parallel
Strand 3	B	287	297	anti-parallel
Strand 4	B	412	418	anti-parallel
Strand 5	B	441	449	anti-parallel
Strand 6	B	380	388	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	83	85	anti-parallel
Strand 3	C	127	131	parallel
Strand 4	C	106	110	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	141	first strand
Strand 2	C	146	150	anti-parallel
Strand 3	C	240	247	anti-parallel
Strand 4	C	204	210	anti-parallel
Strand 5	C	216	217	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	249	250	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	262	first strand
Strand 2	C	305	318	anti-parallel
Strand 3	C	255	257	anti-parallel
Strand 4	C	343	345	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	262	first strand
Strand 2	C	305	318	anti-parallel
Strand 3	C	287	299	anti-parallel
Strand 4	C	412	418	anti-parallel
Strand 5	C	441	449	anti-parallel
Strand 6	C	380	388	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 29VY

Analysis of interatomic Contacts of Structural Units in PDB entry:
29VY