Analysis of interatomic Contacts of Structural Units in PDB entry:
29VZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 29VZ entry

There is 1 chain in PDB entry 29VZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29HIS 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 29VZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 42Right-handed alpha
Helix 2
AA2
A
59 67Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
89 104Right-handed alpha
Helix 5
AA5
A
154 166Right-handed alpha
Helix 6
AA6
A
180 188Right-handed alpha
Helix 7
AA7
A
193 198Right-handed alpha
Helix 8
AA8
A
199 202Right-handed 310
Helix 9
AA9
A
218 223Right-handed alpha
Helix 10
AB1
A
223 230Right-handed alpha
Helix 11
AB2
A
234 238Right-handed 310
Helix 12
AB3
A
265 280Right-handed alpha
Helix 13
AB4
A
320 332Right-handed alpha
Helix 14
AB5
A
333 336Right-handed 310
Helix 15
AB6
A
338 340Right-handed 310
Helix 16
AB7
A
346 354Right-handed alpha
Helix 17
AB8
A
366 371Right-handed 310
Helix 18
AB9
A
393 403Right-handed alpha
Helix 19
AC1
A
404 407Right-handed 310
Helix 20
AC2
A
421 426Right-handed alpha
Helix 21
AC3
A
454 470Right-handed alpha
Helix 22
AC4
A
471 473Right-handed 310
Helix 23
AC5
A
481 485Right-handed 310
Helix 24
AC6
A
486 490Right-handed 310
Helix 25
AC7
A
499 512Right-handed alpha
Helix 26
AC8
A
514 526Right-handed alpha
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There are 4 sheets in PDB entry 29VZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
83 85anti-parallel
Strand 3
A
127 131parallel
Strand 4
A
106 110parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
146 150anti-parallel
Strand 3
A
240 247anti-parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
216 217anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
249 250anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
255 262anti-parallel
Strand 3
A
306 317anti-parallel
Strand 4
A
287 298anti-parallel
Strand 5
A
412 418anti-parallel
Strand 6
A
441 449anti-parallel
Strand 7
A
380 388anti-parallel
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