Analysis of interatomic Contacts of Structural Units in PDB entry:
29WA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 29WA entry

There is 1 chain in PDB entry 29WA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29ARG 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 29WA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 40Right-handed alpha
Helix 2
AA2
A
41 46Right-handed 310
Helix 3
AA3
A
59 67Right-handed alpha
Helix 4
AA4
A
70 74Right-handed 310
Helix 5
AA5
A
89 104Right-handed alpha
Helix 6
AA6
A
154 166Right-handed alpha
Helix 7
AA7
A
180 188Right-handed alpha
Helix 8
AA8
A
193 198Right-handed alpha
Helix 9
AA9
A
199 202Right-handed 310
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
A
223 231Right-handed alpha
Helix 12
AB3
A
234 238Right-handed 310
Helix 13
AB4
A
264 279Right-handed alpha
Helix 14
AB5
A
319 331Right-handed alpha
Helix 15
AB6
A
332 335Right-handed 310
Helix 16
AB7
A
337 341Right-handed 310
Helix 17
AB8
A
345 354Right-handed alpha
Helix 18
AB9
A
365 371Right-handed 310
Helix 19
AC1
A
392 403Right-handed alpha
Helix 20
AC2
A
404 406Right-handed 310
Helix 21
AC3
A
420 425Right-handed alpha
Helix 22
AC4
A
450 452Right-handed 310
Helix 23
AC5
A
453 468Right-handed alpha
Helix 24
AC6
A
469 472Right-handed 310
Helix 25
AC7
A
485 489Right-handed 310
Helix 26
AC8
A
498 511Right-handed alpha
Helix 27
AC9
A
512 525Right-handed alpha
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There are 4 sheets in PDB entry 29WA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
83 85anti-parallel
Strand 3
A
127 131parallel
Strand 4
A
106 110parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
146 150anti-parallel
Strand 3
A
240 247anti-parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
216 217anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
249 250anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
255 261anti-parallel
Strand 3
A
306 316anti-parallel
Strand 4
A
286 296anti-parallel
Strand 5
A
411 417anti-parallel
Strand 6
A
440 448anti-parallel
Strand 7
A
379 387anti-parallel
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