Analysis of interatomic Contacts of Structural Units in PDB entry:
29WJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 29WJ entry

There are 11 chains in PDB entry 29WJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 171	MET 179
A	ASN 181	ALA 271
B	ASN 280	ALA 318
B	PRO 320	ALA 744
E	LYS 30	TYR 98
C	LYS 172	MET 179
C	ASN 181	PRO 269
D	GLN 287	ASP 308
D	ILE 310	ALA 318
D	PRO 320	ALA 744
F	LYS 30	ILE 81

There are 62 helices in PDB entry 29WJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	226	235	Right-handed alpha
Helix 2	AA2	A	238	242	Right-handed 310
Helix 3	AA3	A	250	261	Right-handed alpha
Helix 4	AA4	B	339	344	Right-handed alpha
Helix 5	AA5	B	346	353	Right-handed alpha
Helix 6	AA6	B	386	395	Right-handed 310
Helix 7	AA7	B	409	434	Right-handed alpha
Helix 8	AA8	B	438	461	Right-handed alpha
Helix 9	AA9	B	462	468	Right-handed alpha
Helix 10	AB1	B	468	476	Right-handed alpha
Helix 11	AB2	B	493	498	Right-handed alpha
Helix 12	AB3	B	499	505	Right-handed 310
Helix 13	AB4	B	528	530	Right-handed 310
Helix 14	AB5	B	534	540	Right-handed alpha
Helix 15	AB6	B	543	553	Right-handed alpha
Helix 16	AB7	B	565	570	Right-handed alpha
Helix 17	AB8	B	582	594	Right-handed alpha
Helix 18	AB9	B	598	607	Right-handed alpha
Helix 19	AC1	B	613	622	Right-handed alpha
Helix 20	AC2	B	623	635	Right-handed alpha
Helix 21	AC3	B	636	640	Right-handed 310
Helix 22	AC4	B	641	648	Right-handed alpha
Helix 23	AC5	B	658	675	Right-handed alpha
Helix 24	AC6	B	687	695	Right-handed alpha
Helix 25	AC7	B	698	707	Right-handed alpha
Helix 26	AC8	B	731	733	Right-handed 310
Helix 27	AC9	B	738	742	Right-handed 310
Helix 28	AD1	E	46	49	Right-handed 310
Helix 29	AD2	E	50	57	Right-handed alpha
Helix 30	AD3	E	62	75	Right-handed alpha
Helix 31	AD4	E	80	91	Right-handed alpha
Helix 32	AD5	C	226	235	Right-handed alpha
Helix 33	AD6	C	238	242	Right-handed 310
Helix 34	AD7	C	250	261	Right-handed alpha
Helix 35	AD8	D	339	344	Right-handed alpha
Helix 36	AD9	D	346	353	Right-handed alpha
Helix 37	AE1	D	386	391	Right-handed 310
Helix 38	AE2	D	409	434	Right-handed alpha
Helix 39	AE3	D	438	461	Right-handed alpha
Helix 40	AE4	D	462	468	Right-handed alpha
Helix 41	AE5	D	468	476	Right-handed alpha
Helix 42	AE6	D	493	498	Right-handed alpha
Helix 43	AE7	D	499	505	Right-handed 310
Helix 44	AE8	D	528	530	Right-handed 310
Helix 45	AE9	D	534	540	Right-handed alpha
Helix 46	AF1	D	543	553	Right-handed alpha
Helix 47	AF2	D	565	570	Right-handed alpha
Helix 48	AF3	D	582	594	Right-handed alpha
Helix 49	AF4	D	598	607	Right-handed alpha
Helix 50	AF5	D	613	622	Right-handed alpha
Helix 51	AF6	D	623	635	Right-handed alpha
Helix 52	AF7	D	641	649	Right-handed alpha
Helix 53	AF8	D	658	675	Right-handed alpha
Helix 54	AF9	D	687	695	Right-handed alpha
Helix 55	AG1	D	698	707	Right-handed alpha
Helix 56	AG2	D	731	733	Right-handed 310
Helix 57	AG3	D	737	742	Right-handed 310
Helix 58	AG4	F	46	48	Right-handed 310
Helix 59	AG5	F	49	57	Right-handed alpha
Helix 60	AG6	F	62	75	Right-handed alpha
Helix 61	AG7	F	80	91	Right-handed alpha
Helix 62	AG8	F	95	99	Right-handed 310

There are 10 sheets in PDB entry 29WJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	B	330	331	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	249	first strand
Strand 2	B	554	556	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	524	526	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	713	first strand
Strand 2	B	727	729	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	37	41	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	D	330	331	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	249	first strand
Strand 2	D	554	556	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	508	510	first strand
Strand 2	D	524	526	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	713	first strand
Strand 2	D	727	729	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	34	first strand
Strand 2	F	37	41	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 29WJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
29WJ