Analysis of interatomic Contacts of Structural Units in PDB entry:
29YE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 29YE entry

There are 6 chains in PDB entry 29YE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 13	GLY 193
B	SER 2	GLY 433
C	ASP 6	ALA 258
D	ASP 13	GLY 193
E	SER 2	GLY 433
F	ASP 6	ALA 258

There are 72 helices in PDB entry 29YE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	37	Right-handed alpha
Helix 2	AA2	A	41	48	Right-handed alpha
Helix 3	AA3	A	80	89	Right-handed alpha
Helix 4	AA4	A	90	95	Right-handed 310
Helix 5	AA5	A	111	115	Right-handed 310
Helix 6	AA6	B	13	21	Right-handed alpha
Helix 7	AA7	B	24	34	Right-handed alpha
Helix 8	AA8	B	42	45	Right-handed 310
Helix 9	AA9	B	46	66	Right-handed alpha
Helix 10	AB1	B	75	86	Right-handed alpha
Helix 11	AB2	B	89	118	Right-handed alpha
Helix 12	AB3	B	125	147	Right-handed alpha
Helix 13	AB4	B	152	167	Right-handed alpha
Helix 14	AB5	B	172	182	Right-handed alpha
Helix 15	AB6	B	187	220	Right-handed alpha
Helix 16	AB7	B	233	239	Right-handed alpha
Helix 17	AB8	B	244	270	Right-handed alpha
Helix 18	AB9	B	276	281	Right-handed 310
Helix 19	AC1	B	295	297	Right-handed 310
Helix 20	AC2	B	298	308	Right-handed alpha
Helix 21	AC3	B	312	322	Right-handed alpha
Helix 22	AC4	B	327	345	Right-handed alpha
Helix 23	AC5	B	345	350	Right-handed alpha
Helix 24	AC6	B	356	359	Right-handed 310
Helix 25	AC7	B	360	381	Right-handed alpha
Helix 26	AC8	B	388	406	Right-handed alpha
Helix 27	AC9	B	406	412	Right-handed alpha
Helix 28	AD1	B	423	433	Right-handed alpha
Helix 29	AD2	C	19	33	Right-handed alpha
Helix 30	AD3	C	34	37	Right-handed 310
Helix 31	AD4	C	44	50	Right-handed 310
Helix 32	AD5	C	57	67	Right-handed alpha
Helix 33	AD6	C	102	107	Right-handed alpha
Helix 34	AD7	C	126	136	Right-handed alpha
Helix 35	AD8	C	201	218	Right-handed alpha
Helix 36	AD9	C	220	255	Right-handed alpha
Helix 37	AE1	D	14	37	Right-handed alpha
Helix 38	AE2	D	41	48	Right-handed alpha
Helix 39	AE3	D	80	89	Right-handed alpha
Helix 40	AE4	D	90	95	Right-handed 310
Helix 41	AE5	D	111	115	Right-handed 310
Helix 42	AE6	E	13	21	Right-handed alpha
Helix 43	AE7	E	24	34	Right-handed alpha
Helix 44	AE8	E	42	45	Right-handed 310
Helix 45	AE9	E	46	66	Right-handed alpha
Helix 46	AF1	E	75	86	Right-handed alpha
Helix 47	AF2	E	89	118	Right-handed alpha
Helix 48	AF3	E	125	147	Right-handed alpha
Helix 49	AF4	E	152	167	Right-handed alpha
Helix 50	AF5	E	172	182	Right-handed alpha
Helix 51	AF6	E	187	220	Right-handed alpha
Helix 52	AF7	E	233	239	Right-handed alpha
Helix 53	AF8	E	244	270	Right-handed alpha
Helix 54	AF9	E	276	281	Right-handed 310
Helix 55	AG1	E	295	297	Right-handed 310
Helix 56	AG2	E	298	308	Right-handed alpha
Helix 57	AG3	E	312	322	Right-handed alpha
Helix 58	AG4	E	327	345	Right-handed alpha
Helix 59	AG5	E	345	350	Right-handed alpha
Helix 60	AG6	E	356	359	Right-handed 310
Helix 61	AG7	E	360	381	Right-handed alpha
Helix 62	AG8	E	388	406	Right-handed alpha
Helix 63	AG9	E	406	412	Right-handed alpha
Helix 64	AH1	E	423	433	Right-handed alpha
Helix 65	AH2	F	19	33	Right-handed alpha
Helix 66	AH3	F	34	37	Right-handed 310
Helix 67	AH4	F	44	50	Right-handed 310
Helix 68	AH5	F	57	67	Right-handed alpha
Helix 69	AH6	F	102	107	Right-handed alpha
Helix 70	AH7	F	126	136	Right-handed alpha
Helix 71	AH8	F	201	218	Right-handed alpha
Helix 72	AH9	F	220	255	Right-handed alpha

There are 12 sheets in PDB entry 29YE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	189	192	anti-parallel
Strand 3	A	182	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	69	first strand
Strand 2	A	72	78	anti-parallel
Strand 3	A	128	132	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	152	155	anti-parallel
Strand 3	A	160	162	anti-parallel
Strand 4	A	168	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	179	181	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	189	192	anti-parallel
Strand 3	D	182	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	69	first strand
Strand 2	D	72	78	anti-parallel
Strand 3	D	128	132	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	152	155	anti-parallel
Strand 3	D	160	162	anti-parallel
Strand 4	D	168	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	38	first strand
Strand 2	E	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	179	181	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 29YE

Analysis of interatomic Contacts of Structural Units in PDB entry:
29YE