Analysis of interatomic Contacts of Structural Units in PDB entry:
29ZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 29ZF entry

There are 2 chains in PDB entry 29ZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 22VAL 377
B
 TYR 26SER 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 29ZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 41Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
74 85Right-handed alpha
Helix 4
AA4
A
107 119Right-handed alpha
Helix 5
AA5
A
127 133Right-handed alpha
Helix 6
AA6
A
136 144Right-handed alpha
Helix 7
AA7
A
178 189Right-handed alpha
Helix 8
AA8
A
214 227Right-handed alpha
Helix 9
AA9
A
228 233Right-handed alpha
Helix 10
AB1
A
262 274Right-handed alpha
Helix 11
AB2
A
302 307Right-handed alpha
Helix 12
AB3
A
320 330Right-handed alpha
Helix 13
AB4
A
338 344Right-handed 310
Helix 14
AB5
A
345 358Right-handed alpha
Helix 15
AB6
B
29 41Right-handed alpha
Helix 16
AB7
B
42 46Right-handed 310
Helix 17
AB8
B
74 84Right-handed alpha
Helix 18
AB9
B
107 119Right-handed alpha
Helix 19
AC1
B
128 133Right-handed alpha
Helix 20
AC2
B
136 143Right-handed alpha
Helix 21
AC3
B
144 146Right-handed 310
Helix 22
AC4
B
178 189Right-handed alpha
Helix 23
AC5
B
214 227Right-handed alpha
Helix 24
AC6
B
228 233Right-handed alpha
Helix 25
AC7
B
262 274Right-handed alpha
Helix 26
AC8
B
302 307Right-handed alpha
Helix 27
AC9
B
320 330Right-handed alpha
Helix 28
AD1
B
339 344Right-handed 310
Helix 29
AD2
B
345 358Right-handed alpha
Helix 30
AD3
C
31 41Right-handed alpha
Helix 31
AD4
C
42 46Right-handed 310
Helix 32
AD5
C
74 84Right-handed alpha
Helix 33
AD6
C
107 119Right-handed alpha
Helix 34
AD7
C
128 133Right-handed alpha
Helix 35
AD8
C
136 143Right-handed alpha
Helix 36
AD9
C
144 146Right-handed 310
Helix 37
AE1
C
178 188Right-handed alpha
Helix 38
AE2
C
214 228Right-handed alpha
Helix 39
AE3
C
228 233Right-handed alpha
Helix 40
AE4
C
262 274Right-handed alpha
Helix 41
AE5
C
302 307Right-handed alpha
Helix 42
AE6
C
320 330Right-handed alpha
Helix 43
AE7
C
339 344Right-handed 310
Helix 44
AE8
C
345 358Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 29ZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
122 125anti-parallel
Strand 3
A
88 91parallel
Strand 4
A
66 70parallel
Strand 5
A
363 366parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
252 261anti-parallel
Strand 3
A
291 301anti-parallel
Strand 4
A
313 318parallel
Strand 5
A
333 336parallel
Strand 6
A
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
244 250anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 200first strand
Strand 2
A
205 213anti-parallel
Strand 3
A
167 174anti-parallel
Strand 4
A
236 239anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
122 125anti-parallel
Strand 3
B
88 91parallel
Strand 4
B
66 70parallel
Strand 5
B
363 366parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 157first strand
Strand 2
B
244 261anti-parallel
Strand 3
B
291 298anti-parallel
Strand 4
B
313 316parallel
Strand 5
B
333 336parallel
Strand 6
B
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 200first strand
Strand 2
B
205 213anti-parallel
Strand 3
B
167 173anti-parallel
Strand 4
B
236 239anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
122 125anti-parallel
Strand 3
C
88 91parallel
Strand 4
C
66 70parallel
Strand 5
C
363 366parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 157first strand
Strand 2
C
244 261anti-parallel
Strand 3
C
291 298anti-parallel
Strand 4
C
313 316parallel
Strand 5
C
333 336parallel
Strand 6
C
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 201first strand
Strand 2
C
204 213anti-parallel
Strand 3
C
167 174anti-parallel
Strand 4
C
236 239anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il