Analysis of interatomic Contacts of Structural Units in PDB entry:
29ZH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 29ZH entry

There are 5 chains in PDB entry 29ZH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 29	VAL 377
B	SER 29	VAL 377
C	SER 29	VAL 377
D	SER 29	VAL 377
E	SER 29	ARG 111

There are 74 helices in PDB entry 29ZH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	41	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	74	84	Right-handed alpha
Helix 4	AA4	A	107	119	Right-handed alpha
Helix 5	AA5	A	127	133	Right-handed alpha
Helix 6	AA6	A	136	143	Right-handed alpha
Helix 7	AA7	A	144	146	Right-handed 310
Helix 8	AA8	A	178	188	Right-handed alpha
Helix 9	AA9	A	214	227	Right-handed alpha
Helix 10	AB1	A	228	233	Right-handed alpha
Helix 11	AB2	A	262	274	Right-handed alpha
Helix 12	AB3	A	302	307	Right-handed alpha
Helix 13	AB4	A	320	330	Right-handed alpha
Helix 14	AB5	A	339	344	Right-handed 310
Helix 15	AB6	A	345	358	Right-handed alpha
Helix 16	AB7	B	30	42	Right-handed alpha
Helix 17	AB8	B	74	84	Right-handed alpha
Helix 18	AB9	B	107	119	Right-handed alpha
Helix 19	AC1	B	135	142	Right-handed alpha
Helix 20	AC2	B	143	146	Right-handed 310
Helix 21	AC3	B	262	274	Right-handed alpha
Helix 22	AC4	B	320	330	Right-handed alpha
Helix 23	AC5	B	340	345	Right-handed alpha
Helix 24	AC6	B	345	358	Right-handed alpha
Helix 25	AC7	C	30	41	Right-handed alpha
Helix 26	AC8	C	42	46	Right-handed 310
Helix 27	AC9	C	74	84	Right-handed alpha
Helix 28	AD1	C	107	119	Right-handed alpha
Helix 29	AD2	C	127	133	Right-handed alpha
Helix 30	AD3	C	136	143	Right-handed alpha
Helix 31	AD4	C	144	146	Right-handed 310
Helix 32	AD5	C	178	188	Right-handed alpha
Helix 33	AD6	C	214	227	Right-handed alpha
Helix 34	AD7	C	228	233	Right-handed alpha
Helix 35	AD8	C	262	274	Right-handed alpha
Helix 36	AD9	C	302	307	Right-handed alpha
Helix 37	AE1	C	320	330	Right-handed alpha
Helix 38	AE2	C	339	344	Right-handed 310
Helix 39	AE3	C	345	358	Right-handed alpha
Helix 40	AE4	D	30	41	Right-handed alpha
Helix 41	AE5	D	74	84	Right-handed alpha
Helix 42	AE6	D	107	119	Right-handed alpha
Helix 43	AE7	D	136	142	Right-handed alpha
Helix 44	AE8	D	143	146	Right-handed 310
Helix 45	AE9	D	262	274	Right-handed alpha
Helix 46	AF1	D	302	307	Right-handed alpha
Helix 47	AF2	D	320	330	Right-handed alpha
Helix 48	AF3	D	340	345	Right-handed alpha
Helix 49	AF4	D	345	358	Right-handed alpha
Helix 50	AF5	E	30	41	Right-handed alpha
Helix 51	AF6	E	42	46	Right-handed 310
Helix 52	AF7	E	74	84	Right-handed alpha
Helix 53	AF8	E	107	119	Right-handed alpha
Helix 54	AF9	E	127	133	Right-handed alpha
Helix 55	AG1	E	136	143	Right-handed alpha
Helix 56	AG2	E	144	146	Right-handed 310
Helix 57	AG3	E	178	188	Right-handed alpha
Helix 58	AG4	E	214	227	Right-handed alpha
Helix 59	AG5	E	228	233	Right-handed alpha
Helix 60	AG6	E	262	274	Right-handed alpha
Helix 61	AG7	E	302	307	Right-handed alpha
Helix 62	AG8	E	320	330	Right-handed alpha
Helix 63	AG9	E	339	344	Right-handed 310
Helix 64	AH1	E	345	358	Right-handed alpha
Helix 65	AH2	F	30	41	Right-handed alpha
Helix 66	AH3	F	74	84	Right-handed alpha
Helix 67	AH4	F	107	119	Right-handed alpha
Helix 68	AH5	F	135	142	Right-handed alpha
Helix 69	AH6	F	143	146	Right-handed 310
Helix 70	AH7	F	262	274	Right-handed alpha
Helix 71	AH8	F	302	307	Right-handed alpha
Helix 72	AH9	F	320	330	Right-handed alpha
Helix 73	AI1	F	340	345	Right-handed alpha
Helix 74	AI2	F	345	358	Right-handed alpha

There are 16 sheets in PDB entry 29ZH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	88	91	parallel
Strand 4	A	66	70	parallel
Strand 5	A	363	366	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	157	first strand
Strand 2	A	244	261	anti-parallel
Strand 3	A	291	297	anti-parallel
Strand 4	A	313	316	parallel
Strand 5	A	333	336	parallel
Strand 6	A	278	281	anti-parallel
Strand 7	B	374	377	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	201	first strand
Strand 2	A	204	213	anti-parallel
Strand 3	A	167	173	anti-parallel
Strand 4	A	236	239	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	377	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	333	336	anti-parallel
Strand 4	B	313	316	parallel
Strand 5	B	291	298	parallel
Strand 6	B	252	261	anti-parallel
Strand 7	B	148	151	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	122	124	anti-parallel
Strand 3	B	88	91	parallel
Strand 4	B	66	70	parallel
Strand 5	B	363	366	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	122	125	anti-parallel
Strand 3	C	88	91	parallel
Strand 4	C	66	70	parallel
Strand 5	C	363	366	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	252	261	anti-parallel
Strand 3	C	291	298	anti-parallel
Strand 4	C	313	316	parallel
Strand 5	C	333	336	parallel
Strand 6	C	279	281	anti-parallel
Strand 7	D	374	376	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	244	250	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	201	first strand
Strand 2	C	204	213	anti-parallel
Strand 3	C	167	174	anti-parallel
Strand 4	C	236	239	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	376	first strand
Strand 2	D	279	281	anti-parallel
Strand 3	D	333	336	anti-parallel
Strand 4	D	313	316	parallel
Strand 5	D	291	297	parallel
Strand 6	D	251	261	anti-parallel
Strand 7	D	148	153	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	122	124	anti-parallel
Strand 3	D	88	91	parallel
Strand 4	D	66	70	parallel
Strand 5	D	363	366	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	122	125	anti-parallel
Strand 3	E	88	91	parallel
Strand 4	E	66	70	parallel
Strand 5	E	363	366	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	157	first strand
Strand 2	E	244	261	anti-parallel
Strand 3	E	291	297	anti-parallel
Strand 4	E	313	316	parallel
Strand 5	E	333	336	parallel
Strand 6	E	278	281	anti-parallel
Strand 7	F	374	377	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	201	first strand
Strand 2	E	204	213	anti-parallel
Strand 3	E	167	174	anti-parallel
Strand 4	E	236	239	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	377	first strand
Strand 2	F	278	281	anti-parallel
Strand 3	F	333	336	anti-parallel
Strand 4	F	313	316	parallel
Strand 5	F	291	297	parallel
Strand 6	F	252	261	anti-parallel
Strand 7	F	148	151	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	56	first strand
Strand 2	F	122	124	anti-parallel
Strand 3	F	88	91	parallel
Strand 4	F	66	70	parallel
Strand 5	F	363	366	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 29ZH

Analysis of interatomic Contacts of Structural Units in PDB entry:
29ZH