Analysis of interatomic Contacts of Structural Units in PDB entry:
2A6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2A6Q entry

There are 6 chains in PDB entry 2A6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7GLU 92
B
 GLY 7LEU 64
C
 GLY 7GLU 92
D
 GLY 7LEU 64
E
 MET 1TYR 84
F
 MET 1TYR 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2A6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 21Right-handed alpha
Helix 2
2
A
21 33Right-handed alpha
Helix 3
3
A
51 66Right-handed alpha
Helix 4
4
A
66 82Right-handed alpha
Helix 5
5
B
15 33Right-handed alpha
Helix 6
6
B
51 62Right-handed alpha
Helix 7
7
C
15 21Right-handed alpha
Helix 8
8
C
21 33Right-handed alpha
Helix 9
9
C
51 66Right-handed alpha
Helix 10
10
C
66 82Right-handed alpha
Helix 11
11
D
15 21Right-handed alpha
Helix 12
12
D
21 32Right-handed alpha
Helix 13
13
D
51 62Right-handed alpha
Helix 14
14
E
6 18Right-handed alpha
Helix 15
15
E
20 37Right-handed alpha
Helix 16
16
E
49 53Right-handed 310
Helix 17
17
F
6 18Right-handed alpha
Helix 18
18
F
20 37Right-handed alpha
Helix 19
19
F
49 53Right-handed 310
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There are 4 sheets in PDB entry 2A6Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
36 39parallel
Strand 3
A
45 50anti-parallel
Strand 4
B
46 50anti-parallel
Strand 5
B
36 39anti-parallel
Strand 6
B
12 14parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
E
2 5anti-parallel
Strand 3
E
74 79parallel
Strand 4
E
65 70anti-parallel
Strand 5
E
55 59anti-parallel
Strand 6
E
46 47anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
36 39parallel
Strand 3
C
46 50anti-parallel
Strand 4
D
45 50anti-parallel
Strand 5
D
36 39anti-parallel
Strand 6
D
11 14parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
F
2 5anti-parallel
Strand 3
F
74 79parallel
Strand 4
F
65 70anti-parallel
Strand 5
F
56 59anti-parallel
Strand 6
F
46 47anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il