Analysis of interatomic Contacts of Structural Units in PDB entry:
2AD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AD5 entry

There are 2 chains in PDB entry 2AD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 544
B
 MET 1LYS 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 2AD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
71 78Right-handed alpha
Helix 4
4
A
85 87Right-handed 310
Helix 5
5
A
92 105Right-handed alpha
Helix 6
6
A
117 131Right-handed alpha
Helix 7
7
A
147 149Right-handed 310
Helix 8
8
A
150 165Right-handed alpha
Helix 9
9
A
188 200Right-handed alpha
Helix 10
10
A
217 229Right-handed alpha
Helix 11
11
A
231 233Right-handed 310
Helix 12
12
A
243 245Right-handed 310
Helix 13
13
A
246 254Right-handed alpha
Helix 14
14
A
255 264Right-handed alpha
Helix 15
15
A
273 285Right-handed alpha
Helix 16
16
A
301 304Right-handed 310
Helix 17
17
A
305 320Right-handed alpha
Helix 18
18
A
330 337Right-handed alpha
Helix 19
19
A
357 371Right-handed alpha
Helix 20
20
A
379 393Right-handed alpha
Helix 21
21
A
452 459Right-handed alpha
Helix 22
22
A
474 486Right-handed alpha
Helix 23
23
A
515 519Right-handed 310
Helix 24
24
A
526 543Right-handed alpha
Helix 25
25
B
17 31Right-handed alpha
Helix 26
26
B
53 58Right-handed alpha
Helix 27
27
B
71 78Right-handed alpha
Helix 28
28
B
85 87Right-handed 310
Helix 29
29
B
92 105Right-handed alpha
Helix 30
30
B
117 132Right-handed alpha
Helix 31
31
B
150 165Right-handed alpha
Helix 32
32
B
188 200Right-handed alpha
Helix 33
33
B
217 229Right-handed alpha
Helix 34
34
B
231 233Right-handed 310
Helix 35
35
B
243 245Right-handed 310
Helix 36
36
B
246 254Right-handed alpha
Helix 37
37
B
255 265Right-handed alpha
Helix 38
38
B
273 285Right-handed alpha
Helix 39
39
B
301 304Right-handed 310
Helix 40
40
B
305 319Right-handed alpha
Helix 41
41
B
330 337Right-handed alpha
Helix 42
42
B
338 342Right-handed 310
Helix 43
43
B
357 371Right-handed alpha
Helix 44
44
B
379 393Right-handed alpha
Helix 45
45
B
452 459Right-handed alpha
Helix 46
46
B
477 485Right-handed alpha
Helix 47
47
B
515 520Right-handed 310
Helix 48
48
B
526 543Right-handed alpha
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There are 10 sheets in PDB entry 2AD5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
36 42parallel
Strand 3
A
136 141parallel
Strand 4
A
4 10parallel
Strand 5
A
169 176parallel
Strand 6
A
207 212parallel
Strand 7
A
235 239parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
68 70anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
185 186anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 329first strand
Strand 2
A
288 296parallel
Strand 3
A
346 349parallel
Strand 4
A
375 378parallel
Strand 5
A
509 512parallel
Strand 6
A
498 502anti-parallel
Strand 7
A
487 491anti-parallel
Strand 8
A
440 448anti-parallel
Strand 9
A
462 469anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
472 473anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
36 42parallel
Strand 3
B
136 144parallel
Strand 4
B
4 10parallel
Strand 5
B
169 176parallel
Strand 6
B
207 212parallel
Strand 7
B
235 239parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
68 69anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
185 186anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 329first strand
Strand 2
B
288 296parallel
Strand 3
B
346 349parallel
Strand 4
B
375 378parallel
Strand 5
B
509 512parallel
Strand 6
B
497 502anti-parallel
Strand 7
B
487 492anti-parallel
Strand 8
B
440 448anti-parallel
Strand 9
B
462 469anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
472 473anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il