Analysis of interatomic Contacts of Structural Units in PDB entry:
2AE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AE8 entry

There are 6 chains in PDB entry 2AE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1THR 179
B
 ALA 0THR 179
C
 MSE 1THR 179
D
 MSE 1THR 179
E
 ALA 0THR 179
F
 MSE 1THR 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2AE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 46Right-handed alpha
Helix 2
2
A
60 83Right-handed alpha
Helix 3
3
A
130 143Right-handed alpha
Helix 4
4
A
156 176Right-handed alpha
Helix 5
5
B
31 46Right-handed alpha
Helix 6
6
B
60 83Right-handed alpha
Helix 7
7
B
130 143Right-handed alpha
Helix 8
8
B
156 177Right-handed alpha
Helix 9
9
C
31 46Right-handed alpha
Helix 10
10
C
60 83Right-handed alpha
Helix 11
11
C
130 144Right-handed alpha
Helix 12
12
C
156 177Right-handed alpha
Helix 13
13
D
31 46Right-handed alpha
Helix 14
14
D
60 83Right-handed alpha
Helix 15
15
D
130 143Right-handed alpha
Helix 16
16
D
156 177Right-handed alpha
Helix 17
17
E
31 46Right-handed alpha
Helix 18
18
E
60 83Right-handed alpha
Helix 19
19
E
130 144Right-handed alpha
Helix 20
20
E
156 177Right-handed alpha
Helix 21
21
F
31 46Right-handed alpha
Helix 22
22
F
61 83Right-handed alpha
Helix 23
23
F
130 143Right-handed alpha
Helix 24
24
F
156 177Right-handed alpha
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There are 18 sheets in PDB entry 2AE8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
48 54anti-parallel
Strand 4
A
26 28parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 96first strand
Strand 2
A
99 106anti-parallel
Strand 3
A
146 153anti-parallel
Strand 4
A
112 116parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
127 128anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
48 53anti-parallel
Strand 4
B
26 28parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 96first strand
Strand 2
B
99 106anti-parallel
Strand 3
B
146 153anti-parallel
Strand 4
B
112 116parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
127 128anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
13 19anti-parallel
Strand 3
C
48 54anti-parallel
Strand 4
C
26 28parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 96first strand
Strand 2
C
99 106anti-parallel
Strand 3
C
146 153anti-parallel
Strand 4
C
112 116parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
127 128anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
14 19anti-parallel
Strand 3
D
48 53anti-parallel
Strand 4
D
26 28parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 96first strand
Strand 2
D
99 106anti-parallel
Strand 3
D
146 153anti-parallel
Strand 4
D
112 116parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 124first strand
Strand 2
D
127 128anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 7first strand
Strand 2
E
14 19anti-parallel
Strand 3
E
48 53anti-parallel
Strand 4
E
27 28parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 96first strand
Strand 2
E
99 106anti-parallel
Strand 3
E
146 153anti-parallel
Strand 4
E
112 116parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
123 124first strand
Strand 2
E
127 128anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 7first strand
Strand 2
F
13 19anti-parallel
Strand 3
F
48 54anti-parallel
Strand 4
F
26 28parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
89 96first strand
Strand 2
F
99 106anti-parallel
Strand 3
F
146 153anti-parallel
Strand 4
F
112 116parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
123 124first strand
Strand 2
F
127 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il