Analysis of interatomic Contacts of Structural Units in PDB entry:
2AEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AEE entry

There are 2 chains in PDB entry 2AEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1GLN 208
B
 MET 1GLN 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2AEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
28 30Right-handed 310
Helix 3
3
A
39 44Right-handed 310
Helix 4
4
A
45 64Right-handed alpha
Helix 5
5
A
77 89Right-handed alpha
Helix 6
6
A
128 141Right-handed alpha
Helix 7
7
A
156 167Right-handed alpha
Helix 8
8
A
175 186Right-handed alpha
Helix 9
9
A
190 203Right-handed alpha
Helix 10
10
B
2 14Right-handed alpha
Helix 11
11
B
39 44Right-handed 310
Helix 12
12
B
45 64Right-handed alpha
Helix 13
13
B
77 89Right-handed alpha
Helix 14
14
B
128 141Right-handed alpha
Helix 15
15
B
156 167Right-handed alpha
Helix 16
16
B
176 186Right-handed alpha
Helix 17
17
B
190 203Right-handed alpha
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There are 6 sheets in PDB entry 2AEE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
35 37anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
32 33anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
69 73parallel
Strand 4
A
117 125parallel
Strand 5
A
144 153parallel
Strand 6
A
170 172parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
35 37anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
32 33anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
92 95anti-parallel
Strand 3
B
69 73parallel
Strand 4
B
117 125parallel
Strand 5
B
144 153parallel
Strand 6
B
169 175parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il