Analysis of interatomic Contacts of Structural Units in PDB entry:
2AFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AFX entry

There are 2 chains in PDB entry 2AFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33LEU 361
B
 ALA 33LEU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2AFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 37Right-handed 310
Helix 2
2
A
38 43Right-handed alpha
Helix 3
3
A
49 60Right-handed alpha
Helix 4
4
A
61 69Right-handed alpha
Helix 5
5
A
70 74Right-handed 310
Helix 6
6
A
81 97Right-handed alpha
Helix 7
7
A
160 174Right-handed alpha
Helix 8
8
A
174 180Right-handed alpha
Helix 9
9
A
213 225Right-handed alpha
Helix 10
10
A
261 263Right-handed 310
Helix 11
11
A
264 281Right-handed alpha
Helix 12
12
A
307 312Right-handed alpha
Helix 13
13
A
340 360Right-handed alpha
Helix 14
14
B
35 37Right-handed 310
Helix 15
15
B
38 43Right-handed alpha
Helix 16
16
B
49 60Right-handed alpha
Helix 17
17
B
61 69Right-handed alpha
Helix 18
18
B
70 74Right-handed 310
Helix 19
19
B
81 97Right-handed alpha
Helix 20
20
B
148 152Right-handed 310
Helix 21
21
B
160 174Right-handed alpha
Helix 22
22
B
174 180Right-handed alpha
Helix 23
23
B
213 225Right-handed alpha
Helix 24
24
B
236 240Right-handed alpha
Helix 25
25
B
261 263Right-handed 310
Helix 26
26
B
264 281Right-handed alpha
Helix 27
27
B
288 292Right-handed 310
Helix 28
28
B
307 312Right-handed alpha
Helix 29
29
B
335 339Right-handed 310
Helix 30
30
B
340 360Right-handed alpha
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There are 3 sheets in PDB entry 2AFX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 111first strand
Strand 2
A
118 126anti-parallel
Strand 3
A
191 198anti-parallel
Strand 4
A
133 140parallel
Strand 5
A
241 247parallel
Strand 6
A
317 320parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 113first strand
Strand 2
B
116 126anti-parallel
Strand 3
B
191 198anti-parallel
Strand 4
B
133 140parallel
Strand 5
B
241 247parallel
Strand 6
B
317 320parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 259first strand
Strand 2
B
294 298parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il