Analysis of interatomic Contacts of Structural Units in PDB entry:
2AG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AG5 entry

There are 4 chains in PDB entry 2AG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 246
B
 GLY 2GLY 246
C
 GLY 2LEU 245
D
 GLY 2LEU 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 2AG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
39 44Right-handed alpha
Helix 3
3
A
45 49Right-handed 310
Helix 4
4
A
61 72Right-handed alpha
Helix 5
5
A
89 93Right-handed 310
Helix 6
6
A
94 106Right-handed alpha
Helix 7
7
A
106 124Right-handed alpha
Helix 8
8
A
144 166Right-handed alpha
Helix 9
9
A
182 192Right-handed alpha
Helix 10
10
A
194 205Right-handed alpha
Helix 11
11
A
214 226Right-handed alpha
Helix 12
12
A
227 230Right-handed 310
Helix 13
13
A
242 246Right-handed 310
Helix 14
14
B
16 29Right-handed alpha
Helix 15
15
B
39 44Right-handed alpha
Helix 16
16
B
45 49Right-handed 310
Helix 17
17
B
61 72Right-handed alpha
Helix 18
18
B
89 93Right-handed 310
Helix 19
19
B
94 106Right-handed alpha
Helix 20
20
B
106 123Right-handed alpha
Helix 21
21
B
144 166Right-handed alpha
Helix 22
22
B
182 192Right-handed alpha
Helix 23
23
B
194 205Right-handed alpha
Helix 24
24
B
214 226Right-handed alpha
Helix 25
25
B
227 230Right-handed 310
Helix 26
26
B
242 246Right-handed 310
Helix 27
27
C
16 29Right-handed alpha
Helix 28
28
C
39 44Right-handed alpha
Helix 29
29
C
45 49Right-handed 310
Helix 30
30
C
61 72Right-handed alpha
Helix 31
31
C
89 93Right-handed 310
Helix 32
32
C
94 106Right-handed alpha
Helix 33
33
C
106 123Right-handed alpha
Helix 34
34
C
144 166Right-handed alpha
Helix 35
35
C
182 192Right-handed alpha
Helix 36
36
C
194 205Right-handed alpha
Helix 37
37
C
214 226Right-handed alpha
Helix 38
38
C
227 230Right-handed 310
Helix 39
39
D
16 29Right-handed alpha
Helix 40
40
D
39 45Right-handed alpha
Helix 41
41
D
46 49Right-handed 310
Helix 42
42
D
61 72Right-handed alpha
Helix 43
43
D
89 93Right-handed 310
Helix 44
44
D
94 106Right-handed alpha
Helix 45
45
D
106 124Right-handed alpha
Helix 46
46
D
144 166Right-handed alpha
Helix 47
47
D
182 192Right-handed alpha
Helix 48
48
D
194 205Right-handed alpha
Helix 49
49
D
214 226Right-handed alpha
Helix 50
50
D
227 230Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 2AG5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
32 37parallel
Strand 3
A
8 11parallel
Strand 4
A
77 80parallel
Strand 5
A
126 131parallel
Strand 6
A
170 177parallel
Strand 7
A
236 239parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
212 213parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
77 80parallel
Strand 5
B
126 131parallel
Strand 6
B
170 177parallel
Strand 7
B
236 239parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
212 213parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
32 37parallel
Strand 3
C
8 11parallel
Strand 4
C
77 80parallel
Strand 5
C
126 131parallel
Strand 6
C
170 177parallel
Strand 7
C
236 239parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 181first strand
Strand 2
C
212 213parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 56first strand
Strand 2
D
32 37parallel
Strand 3
D
8 11parallel
Strand 4
D
77 80parallel
Strand 5
D
126 131parallel
Strand 6
D
170 177parallel
Strand 7
D
236 239parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
180 181first strand
Strand 2
D
212 213parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il