Analysis of interatomic Contacts of Structural Units in PDB entry:
2AGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AGK entry

There is 1 chain in PDB entry 2AGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2AGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 51Right-handed alpha
Helix 2
2
A
65 76Right-handed alpha
Helix 3
3
A
90 95Right-handed alpha
Helix 4
4
A
104 108Right-handed 310
Helix 5
5
A
115 127Right-handed alpha
Helix 6
6
A
161 169Right-handed alpha
Helix 7
7
A
190 202Right-handed alpha
Helix 8
8
A
219 229Right-handed alpha
Helix 9
9
A
240 244Right-handed 310
Helix 10
10
A
249 261Right-handed alpha
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There are 2 sheets in PDB entry 2AGK. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
232 235parallel
Strand 3
A
208 212parallel
Strand 4
A
174 178parallel
Strand 5
A
131 141parallel
Strand 6
A
101 103parallel
Strand 7
A
81 83parallel
Strand 8
A
57 61parallel
Strand 9
A
7 11parallel
Strand 10
A
14 15anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
232 235parallel
Strand 3
A
208 212parallel
Strand 4
A
174 178parallel
Strand 5
A
131 141parallel
Strand 6
A
144 149anti-parallel
Strand 7
A
154 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il