Analysis of interatomic Contacts of Structural Units in PDB entry:
2AJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AJ4 entry

There are 2 chains in PDB entry 2AJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9LEU 528
B
 VAL 9LEU 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2AJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 41Right-handed alpha
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
122 142Right-handed alpha
Helix 4
4
A
142 147Right-handed alpha
Helix 5
5
A
169 188Right-handed alpha
Helix 6
6
A
194 203Right-handed alpha
Helix 7
7
A
204 210Right-handed 310
Helix 8
8
A
215 224Right-handed alpha
Helix 9
9
A
273 292Right-handed alpha
Helix 10
10
A
309 323Right-handed alpha
Helix 11
11
A
331 351Right-handed alpha
Helix 12
12
A
352 354Right-handed 310
Helix 13
13
A
358 367Right-handed alpha
Helix 14
14
A
369 379Right-handed alpha
Helix 15
15
A
389 413Right-handed alpha
Helix 16
16
A
418 440Right-handed alpha
Helix 17
17
A
445 458Right-handed alpha
Helix 18
18
A
485 497Right-handed alpha
Helix 19
19
A
497 502Right-handed alpha
Helix 20
20
A
506 513Right-handed alpha
Helix 21
21
B
22 41Right-handed alpha
Helix 22
22
B
61 65Right-handed 310
Helix 23
23
B
122 142Right-handed alpha
Helix 24
24
B
142 147Right-handed alpha
Helix 25
25
B
169 188Right-handed alpha
Helix 26
26
B
194 203Right-handed alpha
Helix 27
27
B
204 210Right-handed 310
Helix 28
28
B
215 224Right-handed alpha
Helix 29
29
B
273 293Right-handed alpha
Helix 30
30
B
309 321Right-handed alpha
Helix 31
31
B
331 350Right-handed alpha
Helix 32
32
B
351 354Right-handed 310
Helix 33
33
B
358 367Right-handed alpha
Helix 34
34
B
369 379Right-handed alpha
Helix 35
35
B
389 413Right-handed alpha
Helix 36
36
B
419 440Right-handed alpha
Helix 37
37
B
445 457Right-handed alpha
Helix 38
38
B
485 497Right-handed alpha
Helix 39
39
B
497 502Right-handed alpha
Helix 40
40
B
506 513Right-handed alpha
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There are 6 sheets in PDB entry 2AJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
524 527parallel
Strand 3
A
46 57anti-parallel
Strand 4
A
69 84anti-parallel
Strand 5
A
153 160anti-parallel
Strand 6
A
90 95parallel
Strand 7
A
103 106anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 233first strand
Strand 2
A
239 243anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
473 480anti-parallel
Strand 3
A
252 259anti-parallel
Strand 4
A
514 517anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
524 527parallel
Strand 3
B
46 57anti-parallel
Strand 4
B
69 83anti-parallel
Strand 5
B
154 160anti-parallel
Strand 6
B
90 95parallel
Strand 7
B
103 106anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 233first strand
Strand 2
B
239 243anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 465first strand
Strand 2
B
473 480anti-parallel
Strand 3
B
252 259anti-parallel
Strand 4
B
514 516anti-parallel
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