Analysis of interatomic Contacts of Structural Units in PDB entry:
2AJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2AJD entry

There are 4 chains in PDB entry 2AJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 39	PRO 766
B	SER 39	PRO 766
C	SER 39	PRO 766
D	SER 39	PRO 766

There are 74 helices in PDB entry 2AJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	50	Right-handed alpha
Helix 2	2	A	200	206	Right-handed alpha
Helix 3	3	A	274	276	Right-handed 310
Helix 4	4	A	290	295	Right-handed alpha
Helix 5	5	A	340	342	Right-handed 310
Helix 6	6	A	421	425	Right-handed 310
Helix 7	7	A	497	505	Right-handed alpha
Helix 8	8	A	562	570	Right-handed alpha
Helix 9	9	A	587	592	Right-handed alpha
Helix 10	10	A	593	595	Right-handed 310
Helix 11	11	A	600	616	Right-handed alpha
Helix 12	12	A	630	642	Right-handed alpha
Helix 13	13	A	658	662	Right-handed 310
Helix 14	14	A	663	672	Right-handed alpha
Helix 15	15	A	679	685	Right-handed alpha
Helix 16	16	A	687	698	Right-handed 310
Helix 17	17	A	712	726	Right-handed alpha
Helix 18	18	A	744	763	Right-handed alpha
Helix 19	19	B	44	50	Right-handed alpha
Helix 20	20	B	91	99	Right-handed alpha
Helix 21	21	B	200	207	Right-handed alpha
Helix 22	22	B	274	276	Right-handed 310
Helix 23	23	B	290	295	Right-handed alpha
Helix 24	24	B	421	425	Right-handed 310
Helix 25	25	B	463	465	Right-handed 310
Helix 26	26	B	499	504	Right-handed alpha
Helix 27	27	B	562	570	Right-handed alpha
Helix 28	28	B	587	592	Right-handed alpha
Helix 29	29	B	593	595	Right-handed 310
Helix 30	30	B	600	615	Right-handed alpha
Helix 31	31	B	630	641	Right-handed alpha
Helix 32	32	B	658	662	Right-handed 310
Helix 33	33	B	663	672	Right-handed alpha
Helix 34	34	B	679	686	Right-handed alpha
Helix 35	35	B	688	698	Right-handed 310
Helix 36	36	B	713	727	Right-handed alpha
Helix 37	37	B	744	763	Right-handed alpha
Helix 38	38	C	44	50	Right-handed alpha
Helix 39	39	C	200	207	Right-handed alpha
Helix 40	40	C	290	295	Right-handed alpha
Helix 41	41	C	421	425	Right-handed 310
Helix 42	42	C	463	465	Right-handed 310
Helix 43	43	C	497	505	Right-handed alpha
Helix 44	44	C	562	572	Right-handed alpha
Helix 45	45	C	587	592	Right-handed alpha
Helix 46	46	C	593	595	Right-handed 310
Helix 47	47	C	600	614	Right-handed alpha
Helix 48	48	C	630	641	Right-handed alpha
Helix 49	49	C	658	662	Right-handed 310
Helix 50	50	C	663	672	Right-handed alpha
Helix 51	51	C	679	685	Right-handed alpha
Helix 52	52	C	686	687	Right-handed 310
Helix 53	53	C	688	698	Right-handed 310
Helix 54	54	C	712	726	Right-handed alpha
Helix 55	55	C	744	763	Right-handed alpha
Helix 56	56	D	44	50	Right-handed alpha
Helix 57	57	D	91	97	Right-handed alpha
Helix 58	58	D	200	207	Right-handed alpha
Helix 59	59	D	274	276	Right-handed 310
Helix 60	60	D	290	295	Right-handed alpha
Helix 61	61	D	340	342	Right-handed 310
Helix 62	62	D	421	425	Right-handed 310
Helix 63	63	D	497	506	Right-handed alpha
Helix 64	64	D	562	570	Right-handed alpha
Helix 65	65	D	587	592	Right-handed alpha
Helix 66	66	D	593	595	Right-handed 310
Helix 67	67	D	600	615	Right-handed alpha
Helix 68	68	D	630	643	Right-handed alpha
Helix 69	69	D	658	662	Right-handed 310
Helix 70	70	D	663	672	Right-handed alpha
Helix 71	71	D	679	685	Right-handed alpha
Helix 72	72	D	687	698	Right-handed 310
Helix 73	73	D	712	726	Right-handed alpha
Helix 74	74	D	744	763	Right-handed alpha

There are 50 sheets in PDB entry 2AJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	113	122	anti-parallel
Strand 3	A	128	136	anti-parallel
Strand 4	A	141	142	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	171	174	anti-parallel
Strand 4	A	183	184	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	214	216	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	265	272	anti-parallel
Strand 4	A	284	287	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	250	255	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	307	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	330	anti-parallel
Strand 4	A	337	338	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	307	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	330	anti-parallel
Strand 4	A	344	348	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	394	396	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	410	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	438	444	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	461	first strand
Strand 2	A	467	475	anti-parallel
Strand 3	A	479	484	anti-parallel
Strand 4	A	493	495	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	519	first strand
Strand 2	A	522	530	anti-parallel
Strand 3	A	574	579	anti-parallel
Strand 4	A	540	545	parallel
Strand 5	A	619	629	parallel
Strand 6	A	649	653	parallel
Strand 7	A	699	705	parallel
Strand 8	A	731	735	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	507	508	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	88	90	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	113	122	anti-parallel
Strand 3	B	128	136	anti-parallel
Strand 4	B	141	142	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	183	184	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	214	216	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	265	272	anti-parallel
Strand 4	B	284	287	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	250	255	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	307	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	322	330	anti-parallel
Strand 4	B	337	348	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	370	376	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	394	396	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	410	first strand
Strand 2	B	414	419	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	438	444	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	461	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	479	484	anti-parallel
Strand 4	B	492	495	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	519	first strand
Strand 2	B	522	530	anti-parallel
Strand 3	B	574	578	anti-parallel
Strand 4	B	540	546	parallel
Strand 5	B	619	629	parallel
Strand 6	B	649	653	parallel
Strand 7	B	699	705	parallel
Strand 8	B	731	735	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	507	508	parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	67	72	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	86	90	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	113	122	anti-parallel
Strand 3	C	128	136	anti-parallel
Strand 4	C	141	142	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	165	168	anti-parallel
Strand 3	C	171	174	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	222	229	anti-parallel
Strand 3	C	214	216	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	222	229	anti-parallel
Strand 3	C	265	272	anti-parallel
Strand 4	C	284	287	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	240	first strand
Strand 2	C	250	255	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	307	first strand
Strand 2	C	310	317	anti-parallel
Strand 3	C	322	330	anti-parallel
Strand 4	C	337	348	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	370	376	anti-parallel
Strand 3	C	382	388	anti-parallel
Strand 4	C	391	396	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	414	419	anti-parallel
Strand 3	C	430	435	anti-parallel
Strand 4	C	442	444	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	461	first strand
Strand 2	C	467	472	anti-parallel
Strand 3	C	479	484	anti-parallel
Strand 4	C	492	495	anti-parallel

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There are 8 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	519	first strand
Strand 2	C	522	530	anti-parallel
Strand 3	C	574	578	anti-parallel
Strand 4	C	540	546	parallel
Strand 5	C	619	629	parallel
Strand 6	C	649	653	parallel
Strand 7	C	699	705	parallel
Strand 8	C	731	735	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	507	508	parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	67	71	anti-parallel
Strand 3	D	76	80	anti-parallel
Strand 4	D	86	90	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	113	122	anti-parallel
Strand 3	D	128	136	anti-parallel
Strand 4	D	141	142	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	113	122	anti-parallel
Strand 3	D	128	136	anti-parallel
Strand 4	D	148	152	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	164	168	anti-parallel
Strand 3	D	171	175	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	222	229	anti-parallel
Strand 3	D	214	216	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	222	229	anti-parallel
Strand 3	D	265	272	anti-parallel
Strand 4	D	284	287	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	240	first strand
Strand 2	D	250	255	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	307	first strand
Strand 2	D	310	317	anti-parallel
Strand 3	D	322	330	anti-parallel
Strand 4	D	337	338	anti-parallel

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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	307	first strand
Strand 2	D	310	317	anti-parallel
Strand 3	D	322	330	anti-parallel
Strand 4	D	344	348	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	364	first strand
Strand 2	D	370	376	anti-parallel
Strand 3	D	382	388	anti-parallel
Strand 4	D	394	396	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	410	first strand
Strand 2	D	414	419	anti-parallel
Strand 3	D	430	435	anti-parallel
Strand 4	D	442	443	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	461	first strand
Strand 2	D	467	472	anti-parallel
Strand 3	D	479	484	anti-parallel
Strand 4	D	490	495	anti-parallel

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There are 8 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	519	first strand
Strand 2	D	522	530	anti-parallel
Strand 3	D	574	578	anti-parallel
Strand 4	D	540	546	parallel
Strand 5	D	619	629	parallel
Strand 6	D	649	653	parallel
Strand 7	D	699	705	parallel
Strand 8	D	731	735	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2AJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
2AJD