Analysis of interatomic Contacts of Structural Units in PDB entry:
2AKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AKC entry

There are 4 chains in PDB entry 2AKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 23LEU 240
B
 MET 23SER 241
C
 MET 23SER 241
D
 MET 23SER 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 2AKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
34 39Right-handed alpha
Helix 3
3
A
47 63Right-handed alpha
Helix 4
4
A
66 77Right-handed alpha
Helix 5
5
A
79 92Right-handed alpha
Helix 6
6
A
100 116Right-handed alpha
Helix 7
7
A
119 127Right-handed alpha
Helix 8
8
A
130 136Right-handed alpha
Helix 9
9
A
141 150Right-handed alpha
Helix 10
10
A
156 173Right-handed alpha
Helix 11
11
A
176 194Right-handed alpha
Helix 12
12
A
198 218Right-handed alpha
Helix 13
13
A
219 234Right-handed alpha
Helix 14
14
A
235 239Right-handed 310
Helix 15
15
B
28 32Right-handed 310
Helix 16
16
B
34 39Right-handed alpha
Helix 17
17
B
47 63Right-handed alpha
Helix 18
18
B
66 76Right-handed alpha
Helix 19
19
B
79 92Right-handed alpha
Helix 20
20
B
100 116Right-handed alpha
Helix 21
21
B
119 127Right-handed alpha
Helix 22
22
B
130 135Right-handed alpha
Helix 23
23
B
141 143Right-handed 310
Helix 24
24
B
144 149Right-handed alpha
Helix 25
25
B
156 173Right-handed alpha
Helix 26
26
B
176 194Right-handed alpha
Helix 27
27
B
198 218Right-handed alpha
Helix 28
28
B
219 235Right-handed alpha
Helix 29
29
B
236 239Right-handed 310
Helix 30
30
C
28 32Right-handed 310
Helix 31
31
C
34 39Right-handed alpha
Helix 32
32
C
47 63Right-handed alpha
Helix 33
33
C
66 76Right-handed alpha
Helix 34
34
C
79 92Right-handed alpha
Helix 35
35
C
100 114Right-handed alpha
Helix 36
36
C
119 127Right-handed alpha
Helix 37
37
C
130 135Right-handed alpha
Helix 38
38
C
141 143Right-handed 310
Helix 39
39
C
144 149Right-handed alpha
Helix 40
40
C
156 173Right-handed alpha
Helix 41
41
C
176 194Right-handed alpha
Helix 42
42
C
198 217Right-handed alpha
Helix 43
43
C
219 234Right-handed alpha
Helix 44
44
D
28 32Right-handed 310
Helix 45
45
D
34 39Right-handed alpha
Helix 46
46
D
47 63Right-handed alpha
Helix 47
47
D
66 75Right-handed alpha
Helix 48
48
D
79 92Right-handed alpha
Helix 49
49
D
100 116Right-handed alpha
Helix 50
50
D
119 127Right-handed alpha
Helix 51
51
D
130 135Right-handed alpha
Helix 52
52
D
141 143Right-handed 310
Helix 53
53
D
144 149Right-handed alpha
Helix 54
54
D
156 173Right-handed alpha
Helix 55
55
D
176 194Right-handed alpha
Helix 56
56
D
198 217Right-handed alpha
Helix 57
57
D
219 234Right-handed alpha
Helix 58
58
D
235 239Right-handed 310
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There are no sheets in PDB entry 2AKC
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il