Analysis of interatomic Contacts of Structural Units in PDB entry:
2AKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AKJ entry

There is 1 chain in PDB entry 2AKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 22ARG 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2AKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 41Right-handed 310
Helix 2
2
A
45 54Right-handed alpha
Helix 3
3
A
57 62Right-handed alpha
Helix 4
4
A
63 69Right-handed alpha
Helix 5
5
A
72 77Right-handed alpha
Helix 6
6
A
79 88Right-handed alpha
Helix 7
7
A
89 93Right-handed 310
Helix 8
8
A
98 103Right-handed alpha
Helix 9
9
A
112 114Right-handed 310
Helix 10
10
A
119 131Right-handed alpha
Helix 11
11
A
132 136Right-handed 310
Helix 12
12
A
152 154Right-handed 310
Helix 13
13
A
155 165Right-handed alpha
Helix 14
14
A
197 209Right-handed alpha
Helix 15
15
A
215 219Right-handed 310
Helix 16
16
A
238 242Right-handed 310
Helix 17
17
A
284 300Right-handed alpha
Helix 18
18
A
304 308Right-handed 310
Helix 19
19
A
309 318Right-handed alpha
Helix 20
20
A
318 328Right-handed alpha
Helix 21
21
A
371 373Right-handed 310
Helix 22
22
A
377 392Right-handed alpha
Helix 23
23
A
413 418Right-handed alpha
Helix 24
24
A
420 425Right-handed alpha
Helix 25
25
A
434 436Right-handed 310
Helix 26
26
A
442 446Right-handed 310
Helix 27
27
A
454 468Right-handed alpha
Helix 28
28
A
488 492Right-handed 310
Helix 29
29
A
538 551Right-handed alpha
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There are 7 sheets in PDB entry 2AKJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
33 36anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
106 109anti-parallel
Strand 3
A
146 151anti-parallel
Strand 4
A
138 140anti-parallel
Strand 5
A
375 376anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
395 399anti-parallel
Strand 3
A
403 410anti-parallel
Strand 4
A
364 369anti-parallel
Strand 5
A
355 358anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
244 250parallel
Strand 3
A
255 261anti-parallel
Strand 4
A
274 281anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
270 271anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 440first strand
Strand 2
A
476 480parallel
Strand 3
A
494 502parallel
Strand 4
A
508 516anti-parallel
Strand 5
A
528 535anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
554 555anti-parallel
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