Analysis of interatomic Contacts of Structural Units in PDB entry:
2AKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AKP entry

There are 2 chains in PDB entry 2AKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27THR 210
B
 ILE 29VAL 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2AKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 52Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
85 100Right-handed alpha
Helix 4
4
A
101 109Right-handed alpha
Helix 5
5
A
122 129Right-handed 310
Helix 6
6
A
179 185Right-handed 310
Helix 7
7
A
186 198Right-handed alpha
Helix 8
8
B
29 50Right-handed alpha
Helix 9
9
B
52 56Right-handed 310
Helix 10
10
B
70 72Right-handed 310
Helix 11
11
B
85 92Right-handed alpha
Helix 12
12
B
92 100Right-handed alpha
Helix 13
13
B
101 111Right-handed alpha
Helix 14
14
B
122 129Right-handed 310
Helix 15
15
B
181 185Right-handed 310
Helix 16
16
B
186 198Right-handed alpha
Helix 17
17
B
199 201Right-handed 310
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There are 2 sheets in PDB entry 2AKP. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
146 151anti-parallel
Strand 3
A
131 139anti-parallel
Strand 4
A
170 177anti-parallel
Strand 5
A
74 79anti-parallel
Strand 6
A
64 69anti-parallel
Strand 7
A
205 207parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
146 150anti-parallel
Strand 3
B
131 139anti-parallel
Strand 4
B
170 177anti-parallel
Strand 5
B
74 79anti-parallel
Strand 6
B
64 69anti-parallel
Strand 7
B
205 207parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il