Analysis of interatomic Contacts of Structural Units in PDB entry:
2AKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AKT entry

There is 1 chain in PDB entry 2AKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ILE 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2AKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 19Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
43 49Right-handed alpha
Helix 4
4
A
59 64Right-handed 310
Helix 5
5
A
82 86Right-handed 310
Helix 6
6
A
87 90Right-handed 310
Helix 7
7
A
91 110Right-handed alpha
Helix 8
8
A
121 134Right-handed alpha
Helix 9
9
A
136 138Right-handed 310
Helix 10
10
A
144 161Right-handed alpha
Helix 11
11
A
163 165Right-handed 310
Helix 12
12
A
183 185Right-handed 310
Helix 13
13
A
193 199Right-handed alpha
Helix 14
14
A
203 225Right-handed alpha
Helix 15
15
A
229 245Right-handed alpha
Helix 16
16
A
260 262Right-handed 310
Helix 17
17
A
288 299Right-handed alpha
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There are 4 sheets in PDB entry 2AKT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
24 27parallel
Strand 3
A
2 3parallel
Strand 4
A
68 71parallel
Strand 5
A
114 117parallel
Strand 6
A
140 142parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
187 188anti-parallel
Strand 3
A
191 192anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
180 181anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 258first strand
Strand 2
A
264 275anti-parallel
Strand 3
A
278 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il