Analysis of interatomic Contacts of Structural Units in PDB entry:
2ALM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ALM entry

There is 1 chain in PDB entry 2ALM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2GLU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2ALM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
58 63Right-handed alpha
Helix 3
3
A
64 70Right-handed 310
Helix 4
4
A
72 89Right-handed alpha
Helix 5
5
A
111 125Right-handed alpha
Helix 6
6
A
126 130Right-handed 310
Helix 7
7
A
133 139Right-handed alpha
Helix 8
8
A
141 152Right-handed alpha
Helix 9
9
A
162 164Right-handed 310
Helix 10
10
A
165 180Right-handed alpha
Helix 11
11
A
196 206Right-handed alpha
Helix 12
12
A
214 219Right-handed alpha
Helix 13
13
A
243 249Right-handed alpha
Helix 14
14
A
276 291Right-handed alpha
Helix 15
15
A
293 297Right-handed 310
Helix 16
16
A
307 322Right-handed alpha
Helix 17
17
A
331 336Right-handed alpha
Helix 18
18
A
338 340Right-handed 310
Helix 19
19
A
341 356Right-handed alpha
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There are 3 sheets in PDB entry 2ALM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
101 106parallel
Strand 3
A
185 192parallel
Strand 4
A
234 242anti-parallel
Strand 5
A
6 14anti-parallel
Strand 6
A
255 264anti-parallel
Strand 7
A
399 407anti-parallel
Strand 8
A
388 395anti-parallel
Strand 9
A
299 301parallel
Strand 10
A
328 329parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
50 51anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
382 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il