Analysis of interatomic Contacts of Structural Units in PDB entry:
2AM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AM1 entry

There is 1 chain in PDB entry 2AM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASN 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2AM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 13Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
50 53Right-handed 310
Helix 4
4
A
54 61Right-handed alpha
Helix 5
5
A
82 99Right-handed alpha
Helix 6
6
A
113 123Right-handed alpha
Helix 7
7
A
139 147Right-handed alpha
Helix 8
8
A
165 175Right-handed alpha
Helix 9
9
A
194 203Right-handed alpha
Helix 10
10
A
204 207Right-handed 310
Helix 11
11
A
220 227Right-handed 310
Helix 12
12
A
271 288Right-handed alpha
Helix 13
13
A
291 299Right-handed alpha
Helix 14
14
A
300 302Right-handed 310
Helix 15
15
A
328 340Right-handed alpha
Helix 16
16
A
363 371Right-handed alpha
Helix 17
17
A
372 375Right-handed 310
Helix 18
18
A
390 401Right-handed alpha
Helix 19
19
A
417 429Right-handed alpha
Helix 20
20
A
442 454Right-handed alpha
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There are 4 sheets in PDB entry 2AM1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
41 42parallel
Strand 3
A
65 68parallel
Strand 4
A
77 79parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
154 158parallel
Strand 3
A
101 106parallel
Strand 4
A
178 181parallel
Strand 5
A
214 218parallel
Strand 6
A
232 236parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 249first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
265 267anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
319 323anti-parallel
Strand 3
A
433 438parallel
Strand 4
A
349 355parallel
Strand 5
A
382 387parallel
Strand 6
A
406 410parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il