Analysis of interatomic Contacts of Structural Units in PDB entry:
2AM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AM7 entry

There is 1 chain in PDB entry 2AM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2AM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
43 48Right-handed alpha
Helix 3
3
A
67 74Right-handed alpha
Helix 4
4
A
82 97Right-handed alpha
Helix 5
5
A
98 101Right-handed 310
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
185 191Right-handed alpha
Helix 9
9
A
191 197Right-handed alpha
Helix 10
10
A
221 229Right-handed alpha
Helix 11
11
A
231 241Right-handed alpha
Helix 12
12
A
259 272Right-handed alpha
Helix 13
13
A
275 281Right-handed 310
Helix 14
14
A
288 307Right-handed alpha
Helix 15
15
A
309 317Right-handed alpha
Helix 16
16
A
333 338Right-handed alpha
Helix 17
17
A
383 388Right-handed alpha
Helix 18
18
A
393 397Right-handed 310
Helix 19
19
A
398 403Right-handed alpha
Helix 20
20
A
430 434Right-handed 310
Helix 21
21
A
435 457Right-handed alpha
Helix 22
22
A
465 481Right-handed alpha
Helix 23
23
A
482 483Right-handed 310
Helix 24
24
A
484 488Right-handed 310
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There are 4 sheets in PDB entry 2AM7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
32 35parallel
Strand 3
A
6 12parallel
Strand 4
A
130 138parallel
Strand 5
A
120 125anti-parallel
Strand 6
A
109 115anti-parallel
Strand 7
A
390 392parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
372 375parallel
Strand 3
A
178 182parallel
Strand 4
A
201 206parallel
Strand 5
A
343 347parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
329 331parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
360 363anti-parallel
Strand 3
A
367 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il