Analysis of interatomic Contacts of Structural Units in PDB entry:
2AMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AMF entry

There are 5 chains in PDB entry 2AMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 256
B
 ALA 0LEU 256
C
 MET 1LEU 256
D
 ASN -1LEU 256
E
 SER -2LEU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 2AMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
32 44Right-handed alpha
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
66 68Right-handed 310
Helix 5
5
A
69 75Right-handed alpha
Helix 6
6
A
91 100Right-handed alpha
Helix 7
7
A
111 117Right-handed 310
Helix 8
8
A
130 143Right-handed alpha
Helix 9
9
A
151 153Right-handed 310
Helix 10
10
A
154 163Right-handed alpha
Helix 11
11
A
164 183Right-handed alpha
Helix 12
12
A
186 207Right-handed alpha
Helix 13
13
A
211 220Right-handed alpha
Helix 14
14
A
224 236Right-handed alpha
Helix 15
15
A
237 256Right-handed alpha
Helix 16
16
B
9 20Right-handed alpha
Helix 17
17
B
32 44Right-handed alpha
Helix 18
18
B
50 58Right-handed alpha
Helix 19
19
B
66 68Right-handed 310
Helix 20
20
B
69 75Right-handed alpha
Helix 21
21
B
91 100Right-handed alpha
Helix 22
22
B
111 117Right-handed 310
Helix 23
23
B
130 143Right-handed alpha
Helix 24
24
B
151 153Right-handed 310
Helix 25
25
B
154 163Right-handed alpha
Helix 26
26
B
164 183Right-handed alpha
Helix 27
27
B
186 208Right-handed alpha
Helix 28
28
B
211 220Right-handed alpha
Helix 29
29
B
224 237Right-handed alpha
Helix 30
30
B
237 256Right-handed alpha
Helix 31
31
C
9 21Right-handed alpha
Helix 32
32
C
32 43Right-handed alpha
Helix 33
33
C
50 57Right-handed alpha
Helix 34
34
C
66 68Right-handed 310
Helix 35
35
C
69 75Right-handed alpha
Helix 36
36
C
91 100Right-handed alpha
Helix 37
37
C
111 117Right-handed 310
Helix 38
38
C
130 143Right-handed alpha
Helix 39
39
C
151 153Right-handed 310
Helix 40
40
C
154 162Right-handed alpha
Helix 41
41
C
164 183Right-handed alpha
Helix 42
42
C
186 208Right-handed alpha
Helix 43
43
C
211 220Right-handed alpha
Helix 44
44
C
224 237Right-handed alpha
Helix 45
45
C
237 256Right-handed alpha
Helix 46
46
D
9 20Right-handed alpha
Helix 47
47
D
32 44Right-handed alpha
Helix 48
48
D
50 56Right-handed alpha
Helix 49
49
D
66 68Right-handed 310
Helix 50
50
D
69 75Right-handed alpha
Helix 51
51
D
91 100Right-handed alpha
Helix 52
52
D
111 117Right-handed 310
Helix 53
53
D
130 143Right-handed alpha
Helix 54
54
D
151 153Right-handed 310
Helix 55
55
D
154 163Right-handed alpha
Helix 56
56
D
164 183Right-handed alpha
Helix 57
57
D
186 208Right-handed alpha
Helix 58
58
D
211 220Right-handed alpha
Helix 59
59
D
224 237Right-handed alpha
Helix 60
60
D
237 256Right-handed alpha
Helix 61
61
E
9 21Right-handed alpha
Helix 62
62
E
32 44Right-handed alpha
Helix 63
63
E
50 58Right-handed alpha
Helix 64
64
E
66 68Right-handed 310
Helix 65
65
E
69 75Right-handed alpha
Helix 66
66
E
91 100Right-handed alpha
Helix 67
67
E
111 117Right-handed 310
Helix 68
68
E
130 143Right-handed alpha
Helix 69
69
E
151 153Right-handed 310
Helix 70
70
E
154 163Right-handed alpha
Helix 71
71
E
164 183Right-handed alpha
Helix 72
72
E
186 208Right-handed alpha
Helix 73
73
E
211 220Right-handed alpha
Helix 74
74
E
224 237Right-handed alpha
Helix 75
75
E
237 256Right-handed alpha
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There are 5 sheets in PDB entry 2AMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
2 6parallel
Strand 3
A
60 63parallel
Strand 4
A
83 85parallel
Strand 5
A
105 109parallel
Strand 6
A
119 125anti-parallel
Strand 7
A
145 149parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
2 6parallel
Strand 3
B
60 63parallel
Strand 4
B
83 85parallel
Strand 5
B
105 109parallel
Strand 6
B
119 125anti-parallel
Strand 7
B
145 149parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
3 6parallel
Strand 3
C
60 63parallel
Strand 4
C
83 85parallel
Strand 5
C
105 109parallel
Strand 6
C
119 125anti-parallel
Strand 7
C
145 149parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 29first strand
Strand 2
D
2 6parallel
Strand 3
D
60 63parallel
Strand 4
D
83 85parallel
Strand 5
D
105 109parallel
Strand 6
D
119 125anti-parallel
Strand 7
D
145 149parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
25 29first strand
Strand 2
E
2 6parallel
Strand 3
E
60 63parallel
Strand 4
E
83 85parallel
Strand 5
E
105 109parallel
Strand 6
E
119 125anti-parallel
Strand 7
E
145 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il