Analysis of interatomic Contacts of Structural Units in PDB entry:
2AMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AMG entry

There is 1 chain in PDB entry 2AMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2AMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
35 48Right-handed alpha
Helix 2
H2
A
92 104Right-handed alpha
Helix 3
H3
A
168 183Right-handed alpha
Helix 4
H4
A
200 209Right-handed alpha
Helix 5
H5
A
238 249Right-handed alpha
Helix 6
H6
A
257 264Right-handed alpha
Helix 7
H7
A
315 323Right-handed alpha
Helix 8
H8
A
342 355Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2AMG. Click on sheet of interest to get list of strands forming it: BS1, BS2,

There are 9 strands in BS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
53 158parallel
Strand 3
A
107 114parallel
Strand 4
A
190 193parallel
Strand 5
A
215 222parallel
Strand 6
A
251 255parallel
Strand 7
A
286 289parallel
Strand 8
A
328 332parallel
Strand 9
A
17 21parallel
Back to list of sheets
Back to top of page

There are 5 strands in BS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 366first strand
Strand 2
A
372 377anti-parallel
Strand 3
A
381 387anti-parallel
Strand 4
A
413 416anti-parallel
Strand 5
A
406 408anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il