Analysis of interatomic Contacts of Structural Units in PDB entry:
2AMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AMH entry

There is 1 chain in PDB entry 2AMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7LEU 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2AMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
52 74Right-handed alpha
Helix 4
4
A
104 116Right-handed alpha
Helix 5
5
A
151 162Right-handed alpha
Helix 6
6
A
163 171Right-handed 310
Helix 7
7
A
175 180Right-handed alpha
Helix 8
8
A
188 194Right-handed alpha
Helix 9
9
A
196 206Right-handed alpha
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There are 2 sheets in PDB entry 2AMH. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
11 14parallel
Strand 3
A
83 94parallel
Strand 4
A
97 99anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
11 14parallel
Strand 3
A
83 94parallel
Strand 4
A
119 130anti-parallel
Strand 5
A
136 147anti-parallel
Strand 6
A
182 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il