Analysis of interatomic Contacts of Structural Units in PDB entry:
2AMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AMJ entry

There are 4 chains in PDB entry 2AMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLY 204
B
 HIS 5GLY 204
C
 SER 13GLY 204
D
 HIS 5GLY 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2AMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 46Right-handed alpha
Helix 2
2
A
60 71Right-handed alpha
Helix 3
3
A
86 100Right-handed alpha
Helix 4
4
A
140 145Right-handed alpha
Helix 5
5
A
154 159Right-handed alpha
Helix 6
6
A
159 169Right-handed alpha
Helix 7
7
A
190 204Right-handed alpha
Helix 8
8
B
30 45Right-handed alpha
Helix 9
9
B
60 71Right-handed alpha
Helix 10
10
B
86 99Right-handed alpha
Helix 11
11
B
140 145Right-handed alpha
Helix 12
12
B
153 159Right-handed alpha
Helix 13
13
B
159 168Right-handed alpha
Helix 14
14
B
187 204Right-handed alpha
Helix 15
15
C
31 46Right-handed alpha
Helix 16
16
C
60 71Right-handed alpha
Helix 17
17
C
86 100Right-handed alpha
Helix 18
18
C
139 143Right-handed 310
Helix 19
19
C
153 159Right-handed alpha
Helix 20
20
C
159 168Right-handed alpha
Helix 21
21
C
190 204Right-handed alpha
Helix 22
22
D
32 45Right-handed alpha
Helix 23
23
D
60 71Right-handed alpha
Helix 24
24
D
86 100Right-handed alpha
Helix 25
25
D
140 145Right-handed alpha
Helix 26
26
D
154 159Right-handed alpha
Helix 27
27
D
159 169Right-handed alpha
Helix 28
28
D
187 204Right-handed alpha
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There are 8 sheets in PDB entry 2AMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
14 19parallel
Strand 3
A
73 79parallel
Strand 4
A
129 135parallel
Strand 5
A
172 173parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
14 19parallel
Strand 3
A
73 79parallel
Strand 4
A
129 135parallel
Strand 5
A
177 179parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 54first strand
Strand 2
B
14 19parallel
Strand 3
B
73 79parallel
Strand 4
B
129 135parallel
Strand 5
B
172 173parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 54first strand
Strand 2
B
14 19parallel
Strand 3
B
73 79parallel
Strand 4
B
129 135parallel
Strand 5
B
177 179parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 54first strand
Strand 2
C
14 19parallel
Strand 3
C
73 79parallel
Strand 4
C
129 135parallel
Strand 5
C
172 173parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 54first strand
Strand 2
C
14 19parallel
Strand 3
C
73 79parallel
Strand 4
C
129 135parallel
Strand 5
C
177 179parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 54first strand
Strand 2
D
14 19parallel
Strand 3
D
73 79parallel
Strand 4
D
129 135parallel
Strand 5
D
172 173parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 54first strand
Strand 2
D
14 19parallel
Strand 3
D
73 79parallel
Strand 4
D
129 135parallel
Strand 5
D
177 179parallel
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