Analysis of interatomic Contacts of Structural Units in PDB entry:
2AML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AML entry

There are 2 chains in PDB entry 2AML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -4ALA 361
B
 MSE 1ALA 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2AML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 2Right-handed 310
Helix 2
2
A
4 10Right-handed alpha
Helix 3
3
A
11 32Right-handed alpha
Helix 4
4
A
46 64Right-handed alpha
Helix 5
5
A
72 80Right-handed alpha
Helix 6
6
A
98 112Right-handed alpha
Helix 7
7
A
125 131Right-handed 310
Helix 8
8
A
148 169Right-handed alpha
Helix 9
9
A
173 190Right-handed alpha
Helix 10
10
A
190 210Right-handed alpha
Helix 11
11
A
222 238Right-handed alpha
Helix 12
12
A
247 251Right-handed alpha
Helix 13
13
A
252 258Right-handed 310
Helix 14
14
A
273 285Right-handed alpha
Helix 15
15
A
316 321Right-handed alpha
Helix 16
16
A
321 335Right-handed alpha
Helix 17
17
A
346 351Right-handed alpha
Helix 18
18
B
4 10Right-handed alpha
Helix 19
19
B
11 23Right-handed alpha
Helix 20
20
B
23 34Right-handed alpha
Helix 21
21
B
46 64Right-handed alpha
Helix 22
22
B
72 80Right-handed alpha
Helix 23
23
B
98 112Right-handed alpha
Helix 24
24
B
125 131Right-handed 310
Helix 25
25
B
148 169Right-handed alpha
Helix 26
26
B
173 190Right-handed alpha
Helix 27
27
B
190 210Right-handed alpha
Helix 28
28
B
222 238Right-handed alpha
Helix 29
29
B
248 258Right-handed 310
Helix 30
30
B
273 285Right-handed alpha
Helix 31
31
B
316 321Right-handed alpha
Helix 32
32
B
321 335Right-handed alpha
Helix 33
33
B
346 351Right-handed alpha
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There are 4 sheets in PDB entry 2AML. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
40 45parallel
Strand 3
A
88 92parallel
Strand 4
A
116 120parallel
Strand 5
A
133 136parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 246first strand
Strand 2
A
215 219parallel
Strand 3
A
263 268parallel
Strand 4
A
291 296parallel
Strand 5
A
304 307parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
40 45parallel
Strand 3
B
88 92parallel
Strand 4
B
116 120parallel
Strand 5
B
133 136parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 246first strand
Strand 2
B
215 219parallel
Strand 3
B
263 268parallel
Strand 4
B
291 296parallel
Strand 5
B
304 307parallel
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