Analysis of interatomic Contacts of Structural Units in PDB entry:
2AMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AMX entry

There are 2 chains in PDB entry 2AMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13PHE 376
B
 GLY 13PHE 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 2AMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
38 49Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
63 74Right-handed alpha
Helix 6
6
A
81 90Right-handed alpha
Helix 7
7
A
97 109Right-handed alpha
Helix 8
8
A
110 112Right-handed 310
Helix 9
9
A
114 132Right-handed alpha
Helix 10
10
A
142 149Right-handed alpha
Helix 11
11
A
153 172Right-handed alpha
Helix 12
12
A
189 195Right-handed alpha
Helix 13
13
A
197 203Right-handed alpha
Helix 14
14
A
219 221Right-handed 310
Helix 15
15
A
222 232Right-handed alpha
Helix 16
16
A
249 258Right-handed alpha
Helix 17
17
A
268 272Right-handed 310
Helix 18
18
A
273 284Right-handed alpha
Helix 19
19
A
290 297Right-handed alpha
Helix 20
20
A
307 314Right-handed alpha
Helix 21
21
A
324 329Right-handed alpha
Helix 22
22
A
331 344Right-handed alpha
Helix 23
23
A
346 361Right-handed alpha
Helix 24
24
A
364 376Right-handed alpha
Helix 25
25
B
16 20Right-handed 310
Helix 26
26
B
33 37Right-handed 310
Helix 27
27
B
38 49Right-handed alpha
Helix 28
28
B
59 61Right-handed 310
Helix 29
29
B
63 74Right-handed alpha
Helix 30
30
B
81 90Right-handed alpha
Helix 31
31
B
97 110Right-handed alpha
Helix 32
32
B
114 132Right-handed alpha
Helix 33
33
B
142 149Right-handed alpha
Helix 34
34
B
153 170Right-handed alpha
Helix 35
35
B
194 203Right-handed alpha
Helix 36
36
B
219 221Right-handed 310
Helix 37
37
B
222 232Right-handed alpha
Helix 38
38
B
249 258Right-handed alpha
Helix 39
39
B
268 272Right-handed 310
Helix 40
40
B
273 284Right-handed alpha
Helix 41
41
B
290 297Right-handed alpha
Helix 42
42
B
307 314Right-handed alpha
Helix 43
43
B
324 329Right-handed alpha
Helix 44
44
B
331 344Right-handed alpha
Helix 45
45
B
346 361Right-handed alpha
Helix 46
46
B
364 373Right-handed alpha
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There are 2 sheets in PDB entry 2AMX. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
134 141parallel
Strand 3
A
177 183parallel
Strand 4
A
207 211parallel
Strand 5
A
235 240parallel
Strand 6
A
263 266parallel
Strand 7
A
286 289parallel
Strand 8
A
317 320parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
134 141parallel
Strand 3
B
177 183parallel
Strand 4
B
207 211parallel
Strand 5
B
235 240parallel
Strand 6
B
263 266parallel
Strand 7
B
286 289parallel
Strand 8
B
317 320parallel
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