Analysis of interatomic Contacts of Structural Units in PDB entry:
2AQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AQS entry

There are 2 chains in PDB entry 2AQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27LYS 186
B
 ALA 32LYS 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2AQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 102Right-handed 310
Helix 2
2
A
148 153Right-handed alpha
Helix 3
3
A
171 176Right-handed 310
Helix 4
4
B
98 102Right-handed 310
Helix 5
5
B
148 153Right-handed 310
Helix 6
6
B
171 176Right-handed 310
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There are 6 sheets in PDB entry 2AQS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
179 185anti-parallel
Strand 4
A
33 40anti-parallel
Strand 5
A
48 58anti-parallel
Strand 6
A
61 68anti-parallel
Strand 7
A
141 143anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
129 131anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
94 96anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
179 185anti-parallel
Strand 4
B
33 40anti-parallel
Strand 5
B
48 58anti-parallel
Strand 6
B
61 68anti-parallel
Strand 7
B
141 143anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
129 131anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
94 96anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il